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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
624191-624366
(+)
FMN
624499-625153 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Q7S_02850
Single gene
DOOR ID:
3469412
Q7S_02850
(ribB)
View Structure
2
1100359-1100457
(+)
TPP
1100491-1101301 (+)
Q7S_05085
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Q7S_05085
Operon
DOOR ID:
1234751
Q7S_05085,
Q7S_05090
View Structure
3
3405538-3405694
(-)
MOCO
3404017-3404530 (-)
Q7S_15565
Molybdenum cofactor biosynthesis protein B
Q7S_15565
Operon
DOOR ID:
1235138
Q7S_15550
(moaE)
,
Q7S_15555
(moaD)
,
Q7S_15560,
Q7S_15565,
Q7S_15570
(moaA)
View Structure
4
3550927-3550989
(+)
fluoride
3551055-3551439 (+)
Q7S_16260
Putative fluoride ion transporter CrcB
Q7S_16260
Single gene
DOOR ID:
3470498
Q7S_16260
View Structure
5
4168598-4168727
(+)
TPP
4169729-4171340 (+)
thiP
Thiamine transporter membrane protein
Q7S_19125
Operon
DOOR ID:
1235284
Q7S_19120
(tbpA)
,
Q7S_19125
(thiP)
,
Q7S_19130
(thiQ)
View Structure
6
4556977-4557166
(+)
lysine
4557311-4558661 (+)
Q7S_20840
Aspartokinase
Q7S_20840
Single gene
DOOR ID:
3470876
Q7S_20840
View Structure
7
4592933-4593059
(+)
TPP
4593181-4595146 (+)
Q7S_20965
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Q7S_20965
Operon
DOOR ID:
1235356
Q7S_20965,
Q7S_20970,
Q7S_20975,
Q7S_20980,
Q7S_20985
(thiG)
,
Q7S_20990
(thiH)
View Structure
8
4792137-4792389
(-)
cobalamin
4790188-4792066 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Q7S_21790
Operon
DOOR ID:
1235391
Q7S_21785,
Q7S_21790
(btuB)
View Structure
Genome:
Rahnella aquatilis HX2
(
NC_017047.1
);
Phylum:
Gammaproteobacteria
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