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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126704-126803
(-)
TPP
125688-126672 (-)
tbpA
UMN798_0117
Operon
DOOR ID:
990612
UMN798_0115
(yabJ)
,
UMN798_0116
(yabK)
,
UMN798_0117
(tbpA)
View Structure
2
869750-869894
(+)
MOCO
870892-871405 (+)
moaB
UMN798_0872
Operon
DOOR ID:
990755
UMN798_0871
(moaA)
,
UMN798_0872
(moaB)
,
UMN798_0873
(moaC)
,
UMN798_0874
(moaD)
,
UMN798_0875
(moaE)
,
UMN798_0876
View Structure
3
1888860-1888961
(+)
yybP-ykoY
1889018-1889639 (+)
UMN798_1930
UMN798_1930
Single gene
DOOR ID:
3468094
UMN798_1930
View Structure
4
2110974-2111149
(-)
cobalamin
2109497-2110877 (-)
cbiA
UMN798_2200
Operon
DOOR ID:
990961
UMN798_2181
(cobT)
,
UMN798_2182
(cobS)
,
UMN798_2183
(cobU)
,
UMN798_2184
(cbiP)
,
UMN798_2185
(cbiO)
,
UMN798_2186
(cbiQ)
,
UMN798_2187
(cbiN)
,
UMN798_2188
(cbiM)
,
UMN798_2189
(cbiL)
,
UMN798_2190
(cbiK)
,
UMN798_2191
(cbiJ)
,
UMN798_2192
(cbiH)
,
UMN798_2193
(cbiG)
,
UMN798_2194
(cbiF)
,
UMN798_2195
(cbiT)
,
UMN798_2196
(cbiE)
,
UMN798_2197
(cbiD)
,
UMN798_2198
(cbiC)
,
UMN798_2199
(cbiB)
,
UMN798_2200
(cbiA)
View Structure
5
2238956-2239052
(-)
TPP
2238126-2238924 (-)
thiM
UMN798_2318
Operon
DOOR ID:
990978
UMN798_2316,
UMN798_2317
(thiD)
,
UMN798_2318
(thiM)
View Structure
6
3378417-3378615
(-)
FMN
3377657-3378311 (-)
ribB
UMN798_3475
Single gene
DOOR ID:
3468583
UMN798_3475
(ribB)
View Structure
7
4367841-4368034
(+)
cobalamin
4368099-4369944 (+)
btuB
UMN798_4475
Operon
DOOR ID:
991365
UMN798_4475
(btuB)
,
UMN798_4476
(murI)
View Structure
8
4402458-4402621
(-)
TPP
4400476-4402372 (-)
thiC
UMN798_4511
Operon
DOOR ID:
991371
UMN798_4506
(thiH)
,
UMN798_4507
(thiG)
,
UMN798_4508
(thiS)
,
UMN798_4509
(thiF)
,
UMN798_4510
(thiE)
,
UMN798_4511
(thiC)
View Structure
9
4600676-4600720
(+)
mini-ykkC
4600741-4601059 (+)
sugE
UMN798_4700
Single gene
DOOR ID:
3468986
UMN798_4700
(sugE)
View Structure
10
4718491-4718603
(+)
Mg sensor
4718627-4721408 (+)
mgtA
UMN798_4826
Single gene
DOOR ID:
3469034
UMN798_4826
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhimurium str. 798
(
NC_017046.1
);
Phylum:
Gammaproteobacteria
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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"869750-869894";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"870892-871405";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:11:"UMN798_0872";i:14;s:6:"Operon";i:15;s:6:"990755";i:16;s:101:"UMN798_0871(moaA);UMN798_0872(moaB);UMN798_0873(moaC);UMN798_0874(moaD);UMN798_0875(moaE);UMN798_0876";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1888860-1888961";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1889018-1889639";i:10;s:1:"+";i:11;s:11:"UMN798_1930";i:12;s:0:"";i:13;s:11:"UMN798_1930";i:14;s:11:"Single gene";i:15;s:7:"3468094";i:16;s:11:"UMN798_1930";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2110974-2111149";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2109497-2110877";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:0:"";i:13;s:11:"UMN798_2200";i:14;s:6:"Operon";i:15;s:6:"990961";i:16;s:359:"UMN798_2181(cobT);UMN798_2182(cobS);UMN798_2183(cobU);UMN798_2184(cbiP);UMN798_2185(cbiO);UMN798_2186(cbiQ);UMN798_2187(cbiN);UMN798_2188(cbiM);UMN798_2189(cbiL);UMN798_2190(cbiK);UMN798_2191(cbiJ);UMN798_2192(cbiH);UMN798_2193(cbiG);UMN798_2194(cbiF);UMN798_2195(cbiT);UMN798_2196(cbiE);UMN798_2197(cbiD);UMN798_2198(cbiC);UMN798_2199(cbiB);UMN798_2200(cbiA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2238956-2239052";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2238126-2238924";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:11:"UMN798_2318";i:14;s:6:"Operon";i:15;s:6:"990978";i:16;s:47:"UMN798_2316;UMN798_2317(thiD);UMN798_2318(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3378417-3378615";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3377657-3378311";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:11:"UMN798_3475";i:14;s:11:"Single gene";i:15;s:7:"3468583";i:16;s:17:"UMN798_3475(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4367841-4368034";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4368099-4369944";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:11:"UMN798_4475";i:14;s:6:"Operon";i:15;s:6:"991365";i:16;s:35:"UMN798_4475(btuB);UMN798_4476(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4402458-4402621";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4400476-4402372";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:11:"UMN798_4511";i:14;s:6:"Operon";i:15;s:6:"991371";i:16;s:107:"UMN798_4506(thiH);UMN798_4507(thiG);UMN798_4508(thiS);UMN798_4509(thiF);UMN798_4510(thiE);UMN798_4511(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4600676-4600720";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4600741-4601059";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:11:"UMN798_4700";i:14;s:11:"Single gene";i:15;s:7:"3468986";i:16;s:17:"UMN798_4700(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017046.1";i:2;s:65:"Salmonella enterica subsp. enterica serovar Typhimurium str. 798 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4718491-4718603";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4718627-4721408";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:11:"UMN798_4826";i:14;s:11:"Single gene";i:15;s:7:"3469034";i:16;s:17:"UMN798_4826(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}