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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
394048-394133
(-)
SAH
392564-393998 (-)
Fraau_0345
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Fraau_0345
Operon
DOOR ID:
987598
Fraau_0342,
Fraau_0343,
Fraau_0344,
Fraau_0345
View Structure
2
410243-410459
(-)
cobalamin
407769-410040 (-)
Fraau_0355
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Fraau_0355
Single gene
DOOR ID:
3460390
Fraau_0355
View Structure
3
508038-508220
(+)
FMN
508350-508992 (+)
Fraau_0451
Riboflavin synthase; alpha subunit
Fraau_0451
Operon
DOOR ID:
987623
Fraau_0451,
Fraau_0452,
Fraau_0453,
Fraau_0454,
Fraau_0455,
Fraau_0456,
Fraau_0457,
Fraau_0458,
Fraau_0459,
Fraau_0460,
Fraau_0461,
Fraau_0462,
Fraau_0463,
Fraau_0464,
Fraau_0465,
Fraau_0466,
Fraau_0467,
Fraau_0468,
Fraau_0469,
Fraau_0470
View Structure
4
593127-593221
(-)
TPP
590914-593074 (-)
Fraau_0527
TonB-dependent siderophore receptor
Fraau_0527
Operon
DOOR ID:
987633
Fraau_0523,
Fraau_0524,
Fraau_0525,
Fraau_0526,
Fraau_0527
View Structure
5
1214206-1214322
(+)
SAM
1214327-1215431 (+)
Fraau_1127
Homoserine acetyltransferase
Fraau_1127
Operon
DOOR ID:
987767
Fraau_1127,
Fraau_1128,
Fraau_1129
View Structure
6
1445481-1445682
(+)
yybP-ykoY
1445702-1446710 (+)
Fraau_1343
Ca2+/Na+ antiporter
Fraau_1343
Single gene
DOOR ID:
3460568
Fraau_1343
View Structure
7
1601058-1601164
(+)
TPP
1601230-1603057 (+)
Fraau_1514
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Fraau_1514
Operon
DOOR ID:
987837
Fraau_1514,
Fraau_1515,
Fraau_1516,
Fraau_1517,
Fraau_1518,
Fraau_1519,
Fraau_1520
View Structure
8
2397153-2397217
(+)
fluoride
2397329-2397719 (+)
Fraau_2261
Putative fluoride ion transporter CrcB
Fraau_2261
Single gene
DOOR ID:
3460724
Fraau_2261
View Structure
9
2751494-2751630
(-)
cobalamin
2751250-2751463 (-)
Fraau_2582
Fraau_2582
Operon
DOOR ID:
988031
Fraau_2581,
Fraau_2582
View Structure
Genome:
Frateuria aurantia DSM 6220
(
NC_017033.1
);
Phylum:
Gammaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"410243-410459";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"407769-410040";i:10;s:1:"-";i:11;s:10:"Fraau_0355";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"Fraau_0355";i:14;s:11:"Single gene";i:15;s:7:"3460390";i:16;s:10:"Fraau_0355";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"508038-508220";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"508350-508992";i:10;s:1:"+";i:11;s:10:"Fraau_0451";i:12;s:34:"Riboflavin synthase; alpha subunit";i:13;s:10:"Fraau_0451";i:14;s:6:"Operon";i:15;s:6:"987623";i:16;s:219:"Fraau_0451;Fraau_0452;Fraau_0453;Fraau_0454;Fraau_0455;Fraau_0456;Fraau_0457;Fraau_0458;Fraau_0459;Fraau_0460;Fraau_0461;Fraau_0462;Fraau_0463;Fraau_0464;Fraau_0465;Fraau_0466;Fraau_0467;Fraau_0468;Fraau_0469;Fraau_0470";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"593127-593221";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"590914-593074";i:10;s:1:"-";i:11;s:10:"Fraau_0527";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:10:"Fraau_0527";i:14;s:6:"Operon";i:15;s:6:"987633";i:16;s:54:"Fraau_0523;Fraau_0524;Fraau_0525;Fraau_0526;Fraau_0527";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1214206-1214322";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1214327-1215431";i:10;s:1:"+";i:11;s:10:"Fraau_1127";i:12;s:28:"Homoserine acetyltransferase";i:13;s:10:"Fraau_1127";i:14;s:6:"Operon";i:15;s:6:"987767";i:16;s:32:"Fraau_1127;Fraau_1128;Fraau_1129";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1445481-1445682";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1445702-1446710";i:10;s:1:"+";i:11;s:10:"Fraau_1343";i:12;s:19:"Ca2+/Na+ antiporter";i:13;s:10:"Fraau_1343";i:14;s:11:"Single gene";i:15;s:7:"3460568";i:16;s:10:"Fraau_1343";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1601058-1601164";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1601230-1603057";i:10;s:1:"+";i:11;s:10:"Fraau_1514";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Fraau_1514";i:14;s:6:"Operon";i:15;s:6:"987837";i:16;s:76:"Fraau_1514;Fraau_1515;Fraau_1516;Fraau_1517;Fraau_1518;Fraau_1519;Fraau_1520";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2397153-2397217";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2397329-2397719";i:10;s:1:"+";i:11;s:10:"Fraau_2261";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Fraau_2261";i:14;s:11:"Single gene";i:15;s:7:"3460724";i:16;s:10:"Fraau_2261";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017033.1";i:2;s:28:"Frateuria aurantia DSM 6220 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2751494-2751630";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2751250-2751463";i:10;s:1:"-";i:11;s:10:"Fraau_2582";i:12;s:0:"";i:13;s:10:"Fraau_2582";i:14;s:6:"Operon";i:15;s:6:"988031";i:16;s:21:"Fraau_2581;Fraau_2582";i:17;s:0:"";i:18;s:15:"View Structure ";}}
