RiboswitchDB

Genome: Flavobacterium indicum GPTSA100-9 (NC_017025.1); Phylum: Bacteroidetes/Chlorobi group

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

505093-505185 (-)

TPP

502800-504990 (-)

KQS_02110

Probable TonB-dependent outer membrane receptor

Single gene

DOOR ID: 3455711

KQS_02110

2

583596-583698 (+)

SAM

583729-584749 (+)

KQS_02445

Methionine synthase; homocysteine S-methyltransferase domain (3)

Operon

DOOR ID: 1335954

KQS_02460 (metF),
KQS_02455,
KQS_02450,
KQS_02445

3

1034306-1034513 (+)

cobalamin

1034592-1036506 (+)

KQS_04625

Probable TonB-dependent outer membrane receptor

Single gene

DOOR ID: 3455851

KQS_04625

4

1106358-1106424 (-)

fluoride

1105021-1106329 (-)

KQS_05035

Chloride channel protein Fjo18-like

Operon

DOOR ID: 1336055

KQS_05035,
KQS_05030,
KQS_05025,
KQS_05020

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