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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
3965-4080
(+)
SAH
4295-5255 (+)
gndA
6-phosphogluconate dehydrogenase (Decarboxylating) (4)
BLASA_0004
Operon
DOOR ID:
1228621
BLASA_0005
(recF)
,
BLASA_0004
(gndA)
,
BLASA_0003
(dnaN)
View Structure
2
109307-109418
(-)
TPP
107356-107983 (-)
thiE2
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
BLASA_0101
Operon
DOOR ID:
1228642
BLASA_0102,
BLASA_0101
(thiE2)
,
BLASA_0100
(thiO)
,
BLASA_0099
(thiS)
,
BLASA_0098
(thiG)
,
BLASA_0097
(thiE)
View Structure
3
603033-603166
(+)
SAM
603178-604480 (+)
thrC
L-threonine synthase
BLASA_0622
Single gene
DOOR ID:
3445912
BLASA_0622
(thrC)
View Structure
4
912822-912905
(-)
c-di-GMP-II
911043-912783 (-)
BLASA_0944
BLASA_0944
Operon
DOOR ID:
1228827
BLASA_0944,
BLASA_0945,
BLASA_0946,
BLASA_0947
View Structure
5
934142-934283
(-)
cobalamin
933086-934064 (-)
BLASA_0968
ABC Fe3+ transporter substrate-binding protein
BLASA_0968
Single gene
DOOR ID:
3446023
BLASA_0968
View Structure
6
1199573-1199707
(-)
cobalamin
1197465-1199520 (-)
BLASA_1256
Cobaltochelatase subunit
BLASA_1256
Operon
DOOR ID:
1228896
BLASA_1247
(cobA)
,
BLASA_1248
(cobD2)
,
BLASA_1249
(cbiG)
,
BLASA_1250
(cbiO)
,
BLASA_1251
(cbiQ)
,
BLASA_1252
(cbiN)
,
BLASA_1253
(cbiM)
,
BLASA_1254
(cobB)
,
BLASA_1255
(cobO)
,
BLASA_1256
View Structure
7
1209618-1209701
(+)
cobalamin
1209753-1213374 (+)
cobN
Aerobic cobaltochelatase subunit cobN
BLASA_1266
Single gene
DOOR ID:
3446122
BLASA_1266
(cobN)
View Structure
8
1519447-1519512
(+)
ykkC-III
1519523-1519838 (+)
sugE
BLASA_1579
single gene
DOOR ID:
3446206
BLASA_1579
(sugE)
View Structure
9
1879477-1879633
(+)
ydaO-yuaA
1879730-1880891 (+)
envC
Protease with a role in cell division
BLASA_1965
Operon
DOOR ID:
1229030
BLASA_1965
(envC)
,
BLASA_1966
View Structure
10
1914674-1914816
(+)
ydaO-yuaA
1914822-1915740 (+)
BLASA_2001
BLASA_2001
Operon
DOOR ID:
1229036
BLASA_1998,
BLASA_1999,
BLASA_2000,
BLASA_2001
View Structure
11
2019842-2020021
(+)
ydaO-yuaA
2020037-2021123 (+)
BLASA_2120
Putative Cell wall-associated hydrolase
BLASA_2120
Single gene
DOOR ID:
3446390
BLASA_2120
View Structure
12
2747465-2747614
(-)
ydaO-yuaA
2746265-2747081 (-)
BLASA_2865
Peptidoglycan-binding coiled-coil domain protein
BLASA_2865
Single gene
DOOR ID:
3446596
BLASA_2865
View Structure
13
2792298-2792450
(+)
ydaO-yuaA
2792518-2793754 (+)
BLASA_2914
Putative NLP/P60 peptidase
BLASA_2914
Single gene
DOOR ID:
3446610
BLASA_2914
View Structure
14
2882064-2882208
(-)
ydaO-yuaA
2880970-2881873 (-)
BLASA_3013
BLASA_3013
Single gene
DOOR ID:
3446645
BLASA_3013
View Structure
15
4585428-4585543
(+)
SAM-IV
4585585-4586878 (+)
metC
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
BLASA_4766
Operon
DOOR ID:
1229652
BLASA_4763,
BLASA_4765,
BLASA_4766
(metC)
,
BLASA_4767
(metX)
,
BLASA_4768
View Structure
Genome:
Blastococcus saxobsidens DD2
(
NC_016943.1
);
Phylum:
Actinobacteria
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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"109307-109418";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"107356-107983";i:10;s:1:"-";i:11;s:5:"thiE2";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"BLASA_0101";i:14;s:6:"Operon";i:15;s:7:"1228642";i:16;s:96:"BLASA_0102;BLASA_0101(thiE2);BLASA_0100(thiO);BLASA_0099(thiS);BLASA_0098(thiG);BLASA_0097(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"603033-603166";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"603178-604480";i:10;s:1:"+";i:11;s:4:"thrC";i:12;s:21:"L-threonine synthase ";i:13;s:10:"BLASA_0622";i:14;s:11:"Single gene";i:15;s:7:"3445912";i:16;s:16:"BLASA_0622(thrC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"912822-912905";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"911043-912783";i:10;s:1:"-";i:11;s:10:"BLASA_0944";i:12;s:0:"";i:13;s:10:"BLASA_0944";i:14;s:6:"Operon";i:15;s:7:"1228827";i:16;s:43:"BLASA_0944;BLASA_0945;BLASA_0946;BLASA_0947";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"934142-934283";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"933086-934064";i:10;s:1:"-";i:11;s:10:"BLASA_0968";i:12;s:46:"ABC Fe3+ transporter substrate-binding protein";i:13;s:10:"BLASA_0968";i:14;s:11:"Single gene";i:15;s:7:"3446023";i:16;s:10:"BLASA_0968";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1199573-1199707";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1197465-1199520";i:10;s:1:"-";i:11;s:10:"BLASA_1256";i:12;s:25:"Cobaltochelatase subunit ";i:13;s:10:"BLASA_1256";i:14;s:6:"Operon";i:15;s:7:"1228896";i:16;s:164:"BLASA_1247(cobA);BLASA_1248(cobD2);BLASA_1249(cbiG);BLASA_1250(cbiO);BLASA_1251(cbiQ);BLASA_1252(cbiN);BLASA_1253(cbiM);BLASA_1254(cobB);BLASA_1255(cobO);BLASA_1256";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1209618-1209701";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1209753-1213374";i:10;s:1:"+";i:11;s:4:"cobN";i:12;s:38:"Aerobic cobaltochelatase subunit cobN ";i:13;s:10:"BLASA_1266";i:14;s:11:"Single gene";i:15;s:7:"3446122";i:16;s:16:"BLASA_1266(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1519447-1519512";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1519523-1519838";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"BLASA_1579";i:14;s:11:"single gene";i:15;s:7:"3446206";i:16;s:16:"BLASA_1579(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1879477-1879633";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1879730-1880891";i:10;s:1:"+";i:11;s:4:"envC";i:12;s:37:"Protease with a role in cell division";i:13;s:10:"BLASA_1965";i:14;s:6:"Operon";i:15;s:7:"1229030";i:16;s:27:"BLASA_1965(envC);BLASA_1966";i:17;s:26:"cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1914674-1914816";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1914822-1915740";i:10;s:1:"+";i:11;s:10:"BLASA_2001";i:12;s:0:"";i:13;s:10:"BLASA_2001";i:14;s:6:"Operon";i:15;s:7:"1229036";i:16;s:43:"BLASA_1998;BLASA_1999;BLASA_2000;BLASA_2001";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2019842-2020021";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2020037-2021123";i:10;s:1:"+";i:11;s:10:"BLASA_2120";i:12;s:39:"Putative Cell wall-associated hydrolase";i:13;s:10:"BLASA_2120";i:14;s:11:"Single gene";i:15;s:7:"3446390";i:16;s:10:"BLASA_2120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2747465-2747614";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2746265-2747081";i:10;s:1:"-";i:11;s:10:"BLASA_2865";i:12;s:48:"Peptidoglycan-binding coiled-coil domain protein";i:13;s:10:"BLASA_2865";i:14;s:11:"Single gene";i:15;s:7:"3446596";i:16;s:10:"BLASA_2865";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2792298-2792450";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2792518-2793754";i:10;s:1:"+";i:11;s:10:"BLASA_2914";i:12;s:26:"Putative NLP/P60 peptidase";i:13;s:10:"BLASA_2914";i:14;s:11:"Single gene";i:15;s:7:"3446610";i:16;s:10:"BLASA_2914";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2882064-2882208";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2880970-2881873";i:10;s:1:"-";i:11;s:10:"BLASA_3013";i:12;s:0:"";i:13;s:10:"BLASA_3013";i:14;s:11:"Single gene";i:15;s:7:"3446645";i:16;s:10:"BLASA_3013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016943.1";i:2;s:28:"Blastococcus saxobsidens DD2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4585428-4585543";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4585585-4586878";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:10:"BLASA_4766";i:14;s:6:"Operon";i:15;s:7:"1229652";i:16;s:66:"BLASA_4763;BLASA_4765;BLASA_4766(metC);BLASA_4767(metX);BLASA_4768";i:17;s:0:"";i:18;s:15:"View Structure ";}}
