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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
54449-54549
(+)
TPP
54601-55204 (+)
MPD5_0042
ECF transporter substrate-specific protein ThiT
MPD5_0042
Single gene
DOOR ID:
3442632
MPD5_0042
View Structure
2
277246-277417
(+)
lysine
277641-279237 (+)
MPD5_0238
Amino acid ABC transporter glutamine-binding protein/permease
MPD5_0238
Operon
DOOR ID:
983596
MPD5_0238,
MPD5_0239
View Structure
3
595648-595679
(+)
PreQ1
596129-596843 (-)
MPD5_0531
MPD5_0531
Single gene
DOOR ID:
3442828
MPD5_0531
View Structure
4
662295-662392
(+)
purine
662500-663082 (+)
MPD5_0597
Xanthine phosphoribosyltransferase (XPRTase) (2)
MPD5_0597
Operon
DOOR ID:
983663
MPD5_0597,
MPD5_0598
View Structure
5
905447-905491
(+)
PreQ1
905512-906487 (+)
MPD5_0823
PreQ1-regulated inosine-uridine nucleosidehydrolase
MPD5_0823
Operon
DOOR ID:
983707
MPD5_0823,
MPD5_0824
View Structure
6
984775-984897
(-)
FMN
984051-984648 (-)
MPD5_0890
Riboflavin transporter
MPD5_0890
Single gene
DOOR ID:
3442950
MPD5_0890
View Structure
7
1073043-1073141
(-)
TPP
1072300-1072960 (-)
MPD5_0967
Aminopyrimidine aminohydrolase
MPD5_0967
Operon
DOOR ID:
983734
MPD5_0964,
MPD5_0965,
MPD5_0966,
MPD5_0967
View Structure
8
1168332-1168485
(-)
yybP-ykoY
1165581-1168287 (-)
MPD5_1049
Calcium-transporting ATPase
MPD5_1049
Single gene
DOOR ID:
3443030
MPD5_1049
View Structure
9
1190620-1190790
(-)
ykoK
1187520-1190181 (-)
MPD5_1065
Mg(2+) transport ATPase; P-type
MPD5_1065
Single gene
DOOR ID:
3443040
MPD5_1065
View Structure
10
1293799-1293874
(+)
glutamine
1294140-1296927 (-)
MPD5_1155
Isoleucine--tRNA ligase (Isoleucyl-tRNA synthetase) (IleRS)
MPD5_1155
Single gene
DOOR ID:
3443065
MPD5_1155
View Structure
11
1351664-1351770
(-)
THF
1351101-1351626 (-)
MPD5_1211
ECF transporter substrate-specific protein FolT
MPD5_1211
Single gene
DOOR ID:
3443084
MPD5_1211
View Structure
Genome:
Melissococcus plutonius DAT561
(
NC_016938.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"905447-905491";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"905512-906487";i:10;s:1:"+";i:11;s:9:"MPD5_0823";i:12;s:52:"PreQ1-regulated inosine-uridine nucleosidehydrolase ";i:13;s:9:"MPD5_0823";i:14;s:6:"Operon";i:15;s:6:"983707";i:16;s:19:"MPD5_0823;MPD5_0824";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"984775-984897";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"984051-984648";i:10;s:1:"-";i:11;s:9:"MPD5_0890";i:12;s:22:"Riboflavin transporter";i:13;s:9:"MPD5_0890";i:14;s:11:"Single gene";i:15;s:7:"3442950";i:16;s:9:"MPD5_0890";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1073043-1073141";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1072300-1072960";i:10;s:1:"-";i:11;s:9:"MPD5_0967";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"MPD5_0967";i:14;s:6:"Operon";i:15;s:6:"983734";i:16;s:39:"MPD5_0964;MPD5_0965;MPD5_0966;MPD5_0967";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1168332-1168485";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1165581-1168287";i:10;s:1:"-";i:11;s:9:"MPD5_1049";i:12;s:28:"Calcium-transporting ATPase ";i:13;s:9:"MPD5_1049";i:14;s:11:"Single gene";i:15;s:7:"3443030";i:16;s:9:"MPD5_1049";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1190620-1190790";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1187520-1190181";i:10;s:1:"-";i:11;s:9:"MPD5_1065";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:9:"MPD5_1065";i:14;s:11:"Single gene";i:15;s:7:"3443040";i:16;s:9:"MPD5_1065";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1293799-1293874";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1294140-1296927";i:10;s:1:"-";i:11;s:9:"MPD5_1155";i:12;s:60:"Isoleucine--tRNA ligase (Isoleucyl-tRNA synthetase) (IleRS)";i:13;s:9:"MPD5_1155";i:14;s:11:"Single gene";i:15;s:7:"3443065";i:16;s:9:"MPD5_1155";i:17;s:42:"isoleucyl-tRNA aminoacylation [GO:0006428]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016938.1";i:2;s:31:"Melissococcus plutonius DAT561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1351664-1351770";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1351101-1351626";i:10;s:1:"-";i:11;s:9:"MPD5_1211";i:12;s:47:"ECF transporter substrate-specific protein FolT";i:13;s:9:"MPD5_1211";i:14;s:11:"Single gene";i:15;s:7:"3443084";i:16;s:9:"MPD5_1211";i:17;s:0:"";i:18;s:15:"View Structure ";}}
