Genome: Paenibacillus mucilaginosus 3016 (NC_016935.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 30481-30568 (+)c-di-GMP-I30679-31390 (+)PM3016_29

Uncharacterized protein		PM3016_29single gene

DOOR ID: 3438583		PM3016_29 View Structure
2 39221-39301 (+)ZMP-ZTP39400-39859 (+)PM3016_39

YwlF		PM3016_39Operon

DOOR ID: 981912		PM3016_39,
PM3016_40		 View Structure
3 472429-472511 (+)c-di-GMP-II472796-473408 (-)PM3016_402

YwrF		PM3016_402Operon

DOOR ID: 981980		PM3016_402,
PM3016_403,
PM3016_404		 View Structure
4 482686-482799 (+)TPP482988-484812 (+)PM3016_411

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PM3016_411Single gene

DOOR ID: 3438749		PM3016_411 View Structure
5 620223-620323 (+)purine620579-621992 (+)PM3016_527

Xanthine/uracil/vitamin C permease		PM3016_527Single gene

DOOR ID: 3438817		PM3016_527 View Structure
6 867320-867424 (-)ykkC-yxkD865868-867236 (-)PM3016_740

Amino acid permease-associated protein		PM3016_740Single gene

DOOR ID: 3438925		PM3016_740 View Structure
7 867585-867691 (+)ykkC-yxkD867756-868473 (+)PM3016_741

Urea carboxylase-associated protein 2		PM3016_741Operon

DOOR ID: 982033		PM3016_741,
PM3016_742,
PM3016_743		 View Structure
8 983194-983279 (+)c-di-GMP-I983387-984512 (+)PM3016_830

Beta-xylanase		PM3016_830single gene

DOOR ID: 3438974		PM3016_830 View Structure
9 1072972-1073112 (+)TPP1073210-1073411 (+)PM3016_925

Thiamine biosynthesis protein ThiS		PM3016_925Operon

DOOR ID: 982056		PM3016_925,
PM3016_926		 View Structure
10 1144746-1144941 (-)cobalamin1143831-1144602 (-)PM3016_994

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		PM3016_994Operon

DOOR ID: 982070		PM3016_991,
PM3016_992,
PM3016_993,
PM3016_994		 View Structure
11 1217896-1217994 (-)purine1216406-1217843 (-)PM3016_1065

PM3016_1065Single gene

DOOR ID: 3439074		PM3016_1065 View Structure
12 1301011-1301155 (+)ydaO-yuaA1301229-1302582 (+)PM3016_1148

Potassium uptake protein; TrkH family		PM3016_1148Operon

DOOR ID: 982101		PM3016_1148,
PM3016_1149,
PM3016_1150		 View Structure
13 1533761-1533901 (-)SAM1532530-1533550 (-)PM3016_1338

Methionine import ATP-binding protein MetN 		PM3016_1338Operon

DOOR ID: 982130		PM3016_1337,
PM3016_1338,
PM3016_1339		 View Structure
14 1611979-1612078 (-)purine1610572-1611910 (-)PM3016_1404

N-ethylammeline chlorohydrolase		PM3016_1404Single gene

DOOR ID: 3439257		PM3016_1404 View Structure
15 1688315-1688464 (-)ydaO-yuaA1687281-1688052 (-)PM3016_1492

PM3016_1492Single gene

DOOR ID: 3439283		PM3016_1492 View Structure
16 1688813-1688971 (+)ydaO-yuaA1689079-1689496 (+)PM3016_1493

PM3016_1493Single gene

DOOR ID: 3439284		PM3016_1493 View Structure
17 1991964-1992128 (-)ydaO-yuaA1989982-1991809 (-)PM3016_1761

YdaO		PM3016_1761Single gene

DOOR ID: 3439417		PM3016_1761 View Structure
18 2874829-2874921 (-)c-di-GMP-I2873281-2874760 (-)PM3016_2465

Diguanylate cyclase		PM3016_2465single gene

DOOR ID: 3439732		PM3016_2465 View Structure
19 2931521-2931661 (+)ydaO-yuaA2931784-2932801 (+)PM3016_2509

MULE transposase; conserved domain protein		PM3016_2509Single gene

DOOR ID: 3439758		PM3016_2509 View Structure
20 3063237-3063315 (+)ZMP-ZTP3063378-3063534 (+)PM3016_2628

PM3016_2628Operon

DOOR ID: 982367		PM3016_2628,
PM3016_2629		 View Structure
21 3291280-3291379 (-)purine3289896-3291189 (-)PM3016_2833

PbuO		PM3016_2833Single gene

DOOR ID: 3439920		PM3016_2833 View Structure
22 3407749-3407921 (+)FMN3408318-3409431 (+)PM3016_2966

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		PM3016_2966Operon

DOOR ID: 982438		PM3016_2966,
PM3016_2967		 View Structure
23 3415019-3415115 (+)c-di-GMP-I3415260-3417726 (+)PM3016_2974

Putative signaling protein YkoW		PM3016_2974single gene

DOOR ID: 3439972		PM3016_2974 View Structure
24 3756139-3756227 (+)c-di-GMP-I3756311-3756653 (+)PM3016_3270

Uncharacterized protein		PM3016_3270single gene

DOOR ID: 3440077		PM3016_3270 View Structure
25 3962369-3962525 (-)FMN3961256-3962237 (-)PM3016_3483

PM3016_3483Operon

DOOR ID: 982541		PM3016_3482,
PM3016_3483		 View Structure
26 4674024-4674112 (-)yybP-ykoY4673138-4673915 (-)PM3016_3991

YkoY		PM3016_3991Single gene

DOOR ID: 3440423		PM3016_3991 View Structure
27 5632708-5632857 (-)ydaO-yuaA5632422-5632590 (-)PM3016_4671

PM3016_4671Single gene

DOOR ID: 3440711		PM3016_4671 View Structure
28 5864555-5864642 (+)c-di-GMP-I5864940-5866101 (+)PM3016_4881

Putative two-component sensor histidine kinase		PM3016_4881single gene

DOOR ID: 3440830		PM3016_4881 View Structure
29 5887749-5887832 (+)c-di-GMP-II5887884-5888052 (+)PM3016_4901

PM3016_4901Single gene

DOOR ID: 3440842		PM3016_4901 View Structure
30 6841091-6841191 (-)TPP6839589-6840945 (-)PM3016_5785

YlmB		PM3016_5785Operon

DOOR ID: 982937		PM3016_5784,
PM3016_5785		 View Structure
31 6899923-6900061 (-)ydaO-yuaA6899026-6899851 (-)PM3016_5836

Cell wall lytic activity		PM3016_5836Single gene

DOOR ID: 3441213		PM3016_5836 View Structure
32 7295056-7295161 (-)TPP7294310-7294904 (-)PM3016_6175

PM3016_6175Operon

DOOR ID: 983005		PM3016_6173,
PM3016_6174,
PM3016_6175		 View Structure
33 7391108-7391228 (-)ykkC-yxkD7389980-7390979 (-)PM3016_6260

ABC transporter		PM3016_6260Operon

DOOR ID: 983015		PM3016_6258,
PM3016_6259,
PM3016_6260		 View Structure
34 7546154-7546303 (-)SAM7545097-7546024 (-)PM3016_6388

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		PM3016_6388Operon

DOOR ID: 983036		PM3016_6387,
PM3016_6388		 View Structure
35 7573293-7573518 (-)cobalamin7572119-7573094 (-)PM3016_6415

ABC transporter substrate-binding protein		PM3016_6415Operon

DOOR ID: 983041		PM3016_6414,
PM3016_6415		 View Structure
36 7616265-7616476 (-)cobalamin7613889-7615980 (-)PM3016_6451

Precorrin-3B C-methyltransferase		PM3016_6451Single gene

DOOR ID: 3441506		PM3016_6451 View Structure
37 7624684-7624883 (+)cobalamin7625018-7627244 (+)PM3016_6461

Ribonucleoside-diphosphate reductase 		PM3016_6461Single gene

DOOR ID: 3441512		PM3016_6461 View Structure
38 7996646-7996736 (-)yybP-ykoY7996228-7996522 (-)PM3016_6792

PM3016_6792Single gene

DOOR ID: 3441679		PM3016_6792 View Structure
39 8096931-8097033 (-)purine8096262-8096748 (-)PM3016_6890

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		PM3016_6890Single gene

DOOR ID: 3441725		PM3016_6890 View Structure
40 8098040-8098219 (+)ydaO-yuaA8098270-8099113 (+)PM3016_6892

PM3016_6892Single gene

DOOR ID: 3441727		PM3016_6892 View Structure
41 8241106-8241394 (-)glmS8239210-8241040 (-)PM3016_7014

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		PM3016_7014Operon

DOOR ID: 983137		PM3016_7013,
PM3016_7014		 View Structure
42 8361514-8361543 (-)SAM-SAH8359603-8361325 (-)PM3016_7136

PM3016_7136Single gene

DOOR ID: 3441820		PM3016_7136 View Structure
43 8378642-8378863 (-)ydaO-yuaA8377131-8378271 (-)PM3016_7154

3D domain-containing protein		PM3016_7154Single gene

DOOR ID: 3441830		PM3016_7154 View Structure
44 8426944-8427078 (+)ydaO-yuaA8427082-8427553 (+)PM3016_7198

NLP/P60 family protein		PM3016_7198Single gene

DOOR ID: 3441852		PM3016_7198 View Structure
45 8601880-8601976 (-)c-di-GMP-I8596472-8601785 (-)PM3016_7351

Fibronectin type III domain-containing protein		PM3016_7351single gene

DOOR ID: 3441937		PM3016_7351 View Structure
46 8681885-8681988 (-)purine8681119-8681716 (-)PM3016_7430

Xanthine phosphoribosyltransferase (XPRTase) (2)		PM3016_7430Operon

DOOR ID: 983214		PM3016_7429,
PM3016_7430		 View Structure