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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79343-79433
(-)
glycine
77757-79035 (-)
glyA2
UDA_0070c
Operon
DOOR ID:
1227751
UDA_0070c
(glyA2)
,
UDA_0069c
(sdaA)
View Structure
2
309785-309958
(-)
cobalamin
307976-309647 (-)
PPE2
UDA_0256c
Operon
DOOR ID:
1227793
UDA_0256c
(PPE2)
,
UDA_0255c
(cobQ1)
,
UDA_0254c
(cobU)
View Structure
3
502361-502471
(+)
TPP
503480-503687 (+)
thiS
UDA_0416
Operon
DOOR ID:
1227824
UDA_0417
(thiG)
,
UDA_0416
(thiS)
,
UDA_0415
(thiO)
View Structure
4
511530-511640
(-)
TPP
509071-509869 (-)
thiD
UDA_0422c
Operon
DOOR ID:
1227826
UDA_0426c,
UDA_0425c
(ctpH)
,
UDA_0424c,
UDA_0423c
(thiC)
,
UDA_0422c
(thiD)
,
UDA_0421c,
UDA_0420c
View Structure
5
967958-968180
(-)
ydaO-yuaA
966724-967948 (-)
rpfA
UDA_0867c
Single gene
DOOR ID:
3437866
UDA_0867c
(rpfA)
View Structure
6
1264183-1264401
(-)
cobalamin
1261770-1264050 (-)
metE
UDA_1133c
Single gene
DOOR ID:
3437928
UDA_1133c
(metE)
View Structure
7
1738572-1738741
(+)
ykoK
1739038-1739275 (+)
UDA_1535
UDA_1535
Single gene
DOOR ID:
3438025
UDA_1535
View Structure
8
2050856-2051030
(+)
ykoK
2051332-2051632 (+)
PE20
UDA_1806
Single gene
DOOR ID:
3438074
UDA_1806
(PE20)
View Structure
9
2078874-2078971
(+)
glycine
2079137-2081963 (+)
gcvB
UDA_1832
Operon
DOOR ID:
1228143
UDA_1830,
UDA_1831,
UDA_1832
(gcvB)
View Structure
10
3731597-3731716
(+)
SAM-IV
3731752-3733102 (+)
metC
UDA_3340
Operon
DOOR ID:
1228486
UDA_3340
(metC)
,
UDA_3341
(metX)
,
UDA_3342
View Structure
Genome:
Mycobacterium tuberculosis UT205
(
NC_016934.1
);
Phylum:
Actinobacteria
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