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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16711-16809
(+)
SAM
16868-17837 (+)
M013TW_0013
M013TW_0013
Single gene
DOOR ID:
3433343
M013TW_0013
View Structure
2
414126-414228
(+)
purine
414458-415037 (+)
M013TW_0367
M013TW_0367
Operon
DOOR ID:
980168
M013TW_0367,
M013TW_0368,
M013TW_0369,
M013TW_0370
View Structure
3
753904-753950
(-)
PreQ1
753065-753734 (-)
M013TW_0698
M013TW_0698
Operon
DOOR ID:
980234
M013TW_0696,
M013TW_0697,
M013TW_0698
View Structure
4
862544-862647
(+)
SAM
862735-863761 (+)
M013TW_0803
M013TW_0803
Operon
DOOR ID:
980253
M013TW_0803,
M013TW_0804,
M013TW_0805
View Structure
5
920508-920598
(+)
preQ1-II
921603-921981 (+)
M013TW_0874
M013TW_0874
Single gene
DOOR ID:
3433684
M013TW_0874
View Structure
6
1002803-1002909
(+)
yybP-ykoY
1002984-1003788 (+)
M013TW_0946
M013TW_0946
Single gene
DOOR ID:
3433711
M013TW_0946
View Structure
7
1064795-1064895
(-)
TPP
1064142-1064718 (-)
M013TW_1010
M013TW_1010
Operon
DOOR ID:
980291
M013TW_1007,
M013TW_1008,
M013TW_1009,
M013TW_1010
View Structure
8
1406175-1406350
(+)
lysine
1406431-1407637 (+)
M013TW_1337
M013TW_1337
Operon
DOOR ID:
980356
M013TW_1337,
M013TW_1338,
M013TW_1339,
M013TW_1340,
M013TW_1341
View Structure
9
1531022-1531156
(-)
FMN
1530414-1530960 (-)
M013TW_1432
M013TW_1432
Single gene
DOOR ID:
3433907
M013TW_1432
View Structure
10
1623103-1623200
(-)
glycine
1621936-1623028 (-)
M013TW_1552
M013TW_1552
Operon
DOOR ID:
980401
M013TW_1550,
M013TW_1551,
M013TW_1552
View Structure
11
1754430-1754605
(-)
lysine
1752790-1754284 (-)
M013TW_1695
M013TW_1695
Single gene
DOOR ID:
3433963
M013TW_1695
View Structure
12
1869747-1869882
(-)
FMN
1868576-1869620 (-)
M013TW_1784
M013TW_1784
Operon
DOOR ID:
980451
M013TW_1781,
M013TW_1782,
M013TW_1783,
M013TW_1784
View Structure
13
1885612-1885723
(-)
SAM
1884312-1885506 (-)
M013TW_1800
M013TW_1800
Single gene
DOOR ID:
3434018
M013TW_1800
View Structure
14
2117235-2117337
(-)
TPP
2116466-2117156 (-)
M013TW_2052
M013TW_2052
Operon
DOOR ID:
980499
M013TW_2049,
M013TW_2050,
M013TW_2051,
M013TW_2052
View Structure
15
2176545-2176761
(-)
glmS
2174537-2176343 (-)
M013TW_2113
M013TW_2113
Single gene
DOOR ID:
3434139
M013TW_2113
View Structure
16
2341669-2341764
(-)
SAM
2340278-2341592 (-)
M013TW_2284
M013TW_2284
Single gene
DOOR ID:
3434204
M013TW_2284
View Structure
Genome:
Staphylococcus aureus subsp. aureus M013
(
NC_016928.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1406175-1406350";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1406431-1407637";i:10;s:1:"+";i:11;s:11:"M013TW_1337";i:12;s:0:"";i:13;s:11:"M013TW_1337";i:14;s:6:"Operon";i:15;s:6:"980356";i:16;s:59:"M013TW_1337;M013TW_1338;M013TW_1339;M013TW_1340;M013TW_1341";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1531022-1531156";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1530414-1530960";i:10;s:1:"-";i:11;s:11:"M013TW_1432";i:12;s:0:"";i:13;s:11:"M013TW_1432";i:14;s:11:"Single gene";i:15;s:7:"3433907";i:16;s:11:"M013TW_1432";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1623103-1623200";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1621936-1623028";i:10;s:1:"-";i:11;s:11:"M013TW_1552";i:12;s:0:"";i:13;s:11:"M013TW_1552";i:14;s:6:"Operon";i:15;s:6:"980401";i:16;s:35:"M013TW_1550;M013TW_1551;M013TW_1552";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1754430-1754605";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1752790-1754284";i:10;s:1:"-";i:11;s:11:"M013TW_1695";i:12;s:0:"";i:13;s:11:"M013TW_1695";i:14;s:11:"Single gene";i:15;s:7:"3433963";i:16;s:11:"M013TW_1695";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1869747-1869882";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1868576-1869620";i:10;s:1:"-";i:11;s:11:"M013TW_1784";i:12;s:0:"";i:13;s:11:"M013TW_1784";i:14;s:6:"Operon";i:15;s:6:"980451";i:16;s:47:"M013TW_1781;M013TW_1782;M013TW_1783;M013TW_1784";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1885612-1885723";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1884312-1885506";i:10;s:1:"-";i:11;s:11:"M013TW_1800";i:12;s:0:"";i:13;s:11:"M013TW_1800";i:14;s:11:"Single gene";i:15;s:7:"3434018";i:16;s:11:"M013TW_1800";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016928.1";i:2;s:41:"Staphylococcus aureus subsp. aureus M013 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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2341669-2341764";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2340278-2341592";i:10;s:1:"-";i:11;s:11:"M013TW_2284";i:12;s:0:"";i:13;s:11:"M013TW_2284";i:14;s:11:"Single gene";i:15;s:7:"3434204";i:16;s:11:"M013TW_2284";i:17;s:0:"";i:18;s:15:"View Structure ";}}