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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15948-16046
(+)
SAM
16105-17074 (+)
SAVC_00060
SAVC_00060
Single gene
DOOR ID:
3430656
SAVC_00060
View Structure
2
377994-378096
(+)
purine
378326-378905 (+)
SAVC_01690
SAVC_01690
Operon
DOOR ID:
1332663
SAVC_01705
(guaA)
,
SAVC_01700,
SAVC_01695,
SAVC_01690
View Structure
3
705099-705145
(-)
PreQ1
704260-704929 (-)
SAVC_03195
SAVC_03195
Operon
DOOR ID:
1332729
SAVC_03195,
SAVC_03190,
SAVC_03185
View Structure
4
811725-811828
(+)
SAM
811916-812942 (+)
SAVC_03720
SAVC_03720
Operon
DOOR ID:
1332750
SAVC_03730,
SAVC_03725,
SAVC_03720
View Structure
5
853244-853334
(+)
preQ1-II
854340-854718 (+)
SAVC_03950
SAVC_03950
Single gene
DOOR ID:
3430975
SAVC_03950
View Structure
6
930687-930793
(+)
yybP-ykoY
930868-931672 (+)
SAVC_04270
SAVC_04270
Single gene
DOOR ID:
3430997
SAVC_04270
View Structure
7
992483-992583
(-)
TPP
991830-992406 (-)
SAVC_04550
SAVC_04550
Operon
DOOR ID:
1332783
SAVC_04550,
SAVC_04545,
SAVC_04540
View Structure
8
1340233-1340408
(+)
lysine
1340489-1341695 (+)
SAVC_06210
SAVC_06210
Operon
DOOR ID:
1332846
SAVC_06210,
SAVC_06215,
SAVC_06220,
SAVC_06225,
SAVC_06230
View Structure
9
1462354-1462488
(-)
FMN
1461746-1462292 (-)
SAVC_06670
SAVC_06670
Single gene
DOOR ID:
3431190
SAVC_06670
View Structure
10
1513611-1513708
(-)
glycine
1512444-1513536 (-)
gcvT
SAVC_06930
Operon
DOOR ID:
1332881
SAVC_06920,
SAVC_06925,
SAVC_06930
(gcvT)
View Structure
11
1643104-1643279
(-)
lysine
1641465-1642959 (-)
lysP
SAVC_07615
Single gene
DOOR ID:
3431230
SAVC_07615
(lysP)
View Structure
12
1759718-1759853
(-)
FMN
1758547-1759591 (-)
SAVC_08060
SAVC_08060
Operon
DOOR ID:
1332930
SAVC_08045
(ribH)
,
SAVC_08050,
SAVC_08055,
SAVC_08060
View Structure
13
1776499-1776609
(-)
SAM
1775199-1776393 (-)
SAVC_08160
SAVC_08160
Single gene
DOOR ID:
3431283
SAVC_08160
View Structure
14
2033610-2033712
(-)
TPP
2032840-2033530 (-)
SAVC_09350
SAVC_09350
Operon
DOOR ID:
1332986
SAVC_09335
(thiE)
,
SAVC_09340,
SAVC_09345,
SAVC_09350
View Structure
15
2090362-2090578
(-)
glmS
2088354-2090160 (-)
SAVC_09640
SAVC_09640
Single gene
DOOR ID:
3431406
SAVC_09640
View Structure
16
2262848-2262943
(-)
SAM
2261457-2262837 (-)
SAVC_10495
SAVC_10495
Single gene
DOOR ID:
3431473
SAVC_10495
View Structure
Genome:
Staphylococcus aureus subsp. aureus VC40
(
NC_016912.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"377994-378096";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"378326-378905";i:10;s:1:"+";i:11;s:10:"SAVC_01690";i:12;s:0:"";i:13;s:10:"SAVC_01690";i:14;s:6:"Operon";i:15;s:7:"1332663";i:16;s:49:"SAVC_01705(guaA);SAVC_01700;SAVC_01695;SAVC_01690";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"705099-705145";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"704260-704929";i:10;s:1:"-";i:11;s:10:"SAVC_03195";i:12;s:0:"";i:13;s:10:"SAVC_03195";i:14;s:6:"Operon";i:15;s:7:"1332729";i:16;s:32:"SAVC_03195;SAVC_03190;SAVC_03185";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"811725-811828";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"811916-812942";i:10;s:1:"+";i:11;s:10:"SAVC_03720";i:12;s:0:"";i:13;s:10:"SAVC_03720";i:14;s:6:"Operon";i:15;s:7:"1332750";i:16;s:32:"SAVC_03730;SAVC_03725;SAVC_03720";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"853244-853334";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"854340-854718";i:10;s:1:"+";i:11;s:10:"SAVC_03950";i:12;s:0:"";i:13;s:10:"SAVC_03950";i:14;s:11:"Single gene";i:15;s:7:"3430975";i:16;s:10:"SAVC_03950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1340233-1340408";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1340489-1341695";i:10;s:1:"+";i:11;s:10:"SAVC_06210";i:12;s:0:"";i:13;s:10:"SAVC_06210";i:14;s:6:"Operon";i:15;s:7:"1332846";i:16;s:54:"SAVC_06210;SAVC_06215;SAVC_06220;SAVC_06225;SAVC_06230";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1462354-1462488";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1461746-1462292";i:10;s:1:"-";i:11;s:10:"SAVC_06670";i:12;s:0:"";i:13;s:10:"SAVC_06670";i:14;s:11:"Single gene";i:15;s:7:"3431190";i:16;s:10:"SAVC_06670";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1513611-1513708";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1512444-1513536";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:10:"SAVC_06930";i:14;s:6:"Operon";i:15;s:7:"1332881";i:16;s:38:"SAVC_06920;SAVC_06925;SAVC_06930(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1643104-1643279";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1641465-1642959";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:10:"SAVC_07615";i:14;s:11:"Single gene";i:15;s:7:"3431230";i:16;s:16:"SAVC_07615(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1759718-1759853";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1758547-1759591";i:10;s:1:"-";i:11;s:10:"SAVC_08060";i:12;s:0:"";i:13;s:10:"SAVC_08060";i:14;s:6:"Operon";i:15;s:7:"1332930";i:16;s:49:"SAVC_08045(ribH);SAVC_08050;SAVC_08055;SAVC_08060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1776499-1776609";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1775199-1776393";i:10;s:1:"-";i:11;s:10:"SAVC_08160";i:12;s:0:"";i:13;s:10:"SAVC_08160";i:14;s:11:"Single gene";i:15;s:7:"3431283";i:16;s:10:"SAVC_08160";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2033610-2033712";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2032840-2033530";i:10;s:1:"-";i:11;s:10:"SAVC_09350";i:12;s:0:"";i:13;s:10:"SAVC_09350";i:14;s:6:"Operon";i:15;s:7:"1332986";i:16;s:49:"SAVC_09335(thiE);SAVC_09340;SAVC_09345;SAVC_09350";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2090362-2090578";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2088354-2090160";i:10;s:1:"-";i:11;s:10:"SAVC_09640";i:12;s:0:"";i:13;s:10:"SAVC_09640";i:14;s:11:"Single gene";i:15;s:7:"3431406";i:16;s:10:"SAVC_09640";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_016912.1";i:2;s:41:"Staphylococcus aureus subsp. aureus VC40 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2262848-2262943";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2261457-2262837";i:10;s:1:"-";i:11;s:10:"SAVC_10495";i:12;s:0:"";i:13;s:10:"SAVC_10495";i:14;s:11:"Single gene";i:15;s:7:"3431473";i:16;s:10:"SAVC_10495";i:17;s:0:"";i:18;s:15:"View Structure ";}}