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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
431695-431808
(+)
SAM-IV
431857-433177 (+)
NOCYR_0389
Cysteine desulfurase (Selenocysteine lyase) (Selenocysteine reductase) (Selenocysteine beta-lyase) (SCL)
NOCYR_0389
Single gene
DOOR ID:
3419953
NOCYR_0389
View Structure
2
478321-478472
(-)
cobalamin
478086-478290 (-)
NOCYR_0435
NOCYR_0435
Operon
DOOR ID:
1224025
NOCYR_0435,
NOCYR_0434
View Structure
3
1113171-1113281
(-)
SAM-IV
1111757-1113083 (-)
metC
O-acetylhomoserine aminocarboxypropyltransferase
NOCYR_0981
Operon
DOOR ID:
1224123
NOCYR_0980
(metX)
,
NOCYR_0981
(metC)
View Structure
4
1943952-1944128
(-)
ykoK
1943056-1943770 (-)
NOCYR_1748
Putative MgtC-magnesium transport family protein
NOCYR_1748
Single gene
DOOR ID:
3420561
NOCYR_1748
View Structure
5
2191937-2192003
(-)
cobalamin
2190832-2191864 (-)
FecD
Iron-dicitrate transporter subunit membrane component of ABC superfamily
NOCYR_1955
Single gene
DOOR ID:
3420665
NOCYR_1955
(FecD)
View Structure
6
2839768-2839864
(+)
glycine
2839866-2839970 (+)
NOCYR_misc_RNA_6
NOCYR_misc_RNA_6
Single gene
DOOR ID:
3422354
NOCYR_misc_RNA_6
View Structure
7
3188345-3188435
(+)
SAH
3190032-3193182 (+)
NOCYR_2871
Transposase
NOCYR_2871
Operon
DOOR ID:
1224495
NOCYR_2871,
NOCYR_2872,
NOCYR_2873
View Structure
8
3669859-3669968
(-)
cobalamin
3666030-3669828 (-)
cobN
Cobaltochelatase subunit
NOCYR_3300
Single gene
DOOR ID:
3421290
NOCYR_3300
(cobN)
View Structure
9
4300875-4301058
(+)
cobalamin
4301258-4303472 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
NOCYR_3907
Single gene
DOOR ID:
3421552
NOCYR_3907
(metE)
View Structure
10
4521678-4521747
(+)
ykkC-III
4521763-4522078 (+)
sugE
NOCYR_4095
single gene
DOOR ID:
3421626
NOCYR_4095
(sugE)
View Structure
11
5720332-5720460
(+)
TPP
5722167-5722635 (-)
NOCYR_5134
Putative thioesterase
NOCYR_5134
Single gene
DOOR ID:
3422099
NOCYR_5134
View Structure
12
5790012-5790126
(-)
SAM-IV
5789575-5789992 (-)
NOCYR_5199
Putative thiosulfate sulfurtransferase glpE
NOCYR_5199
Operon
DOOR ID:
1224965
NOCYR_5198
(metZ)
,
NOCYR_5199
View Structure
Genome:
Nocardia cyriacigeorgica GUH-2
(
NC_016887.1
);
Phylum:
Actinobacteria
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DNA-mediated [GO:0006313]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016887.1";i:2;s:30:"Nocardia cyriacigeorgica GUH-2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3669859-3669968";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3666030-3669828";i:10;s:1:"-";i:11;s:4:"cobN";i:12;s:24:"Cobaltochelatase subunit";i:13;s:10:"NOCYR_3300";i:14;s:11:"Single gene";i:15;s:7:"3421290";i:16;s:16:"NOCYR_3300(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016887.1";i:2;s:30:"Nocardia cyriacigeorgica GUH-2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4300875-4301058";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4301258-4303472";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"NOCYR_3907";i:14;s:11:"Single gene";i:15;s:7:"3421552";i:16;s:16:"NOCYR_3907(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016887.1";i:2;s:30:"Nocardia cyriacigeorgica GUH-2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4521678-4521747";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"4521763-4522078";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"NOCYR_4095";i:14;s:11:"single gene";i:15;s:7:"3421626";i:16;s:16:"NOCYR_4095(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016887.1";i:2;s:30:"Nocardia cyriacigeorgica GUH-2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5720332-5720460";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5722167-5722635";i:10;s:1:"-";i:11;s:10:"NOCYR_5134";i:12;s:21:"Putative thioesterase";i:13;s:10:"NOCYR_5134";i:14;s:11:"Single gene";i:15;s:7:"3422099";i:16;s:10:"NOCYR_5134";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016887.1";i:2;s:30:"Nocardia cyriacigeorgica GUH-2";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5790012-5790126";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5789575-5789992";i:10;s:1:"-";i:11;s:10:"NOCYR_5199";i:12;s:43:"Putative thiosulfate sulfurtransferase glpE";i:13;s:10:"NOCYR_5199";i:14;s:6:"Operon";i:15;s:7:"1224965";i:16;s:27:"NOCYR_5198(metZ);NOCYR_5199";i:17;s:0:"";i:18;s:15:"View Structure ";}}