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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126704-126803
(-)
TPP
125688-126672 (-)
tbpA
STMUK_0109
Operon
DOOR ID:
973982
STMUK_0107
(thiQ)
,
STMUK_0108
(sfuB)
,
STMUK_0109
(tbpA)
View Structure
2
870847-870991
(+)
MOCO
871989-872502 (+)
moaB
STMUK_0808
Operon
DOOR ID:
974122
STMUK_0807
(moaA)
,
STMUK_0808
(moaB)
,
STMUK_0809
(moaC)
,
STMUK_0810
(moaD)
,
STMUK_0811
(moaE)
,
STMUK_0812
(ybhL)
View Structure
3
1891527-1891628
(+)
yybP-ykoY
1891685-1892306 (+)
yebN
STMUK_1807
Single gene
DOOR ID:
3416375
STMUK_1807
(yebN)
View Structure
4
2113642-2113817
(-)
cobalamin
2112165-2113545 (-)
cbiA
STMUK_2065
Operon
DOOR ID:
974344
STMUK_2045
(erfK)
,
STMUK_2046
(cobT)
,
STMUK_2047
(cobS)
,
STMUK_2048
(cobU)
,
STMUK_2049
(cbiP)
,
STMUK_2050
(cbiO)
,
STMUK_2051
(cbiQ)
,
STMUK_2052
(cbiN)
,
STMUK_2053
(cbiM)
,
STMUK_2054
(cbiL)
,
STMUK_2055
(cbiK)
,
STMUK_2056
(cobK)
,
STMUK_2057
(cbiH)
,
STMUK_2058
(cbiG)
,
STMUK_2059
(cbiF)
,
STMUK_2060
(cbiT)
,
STMUK_2061
(cbiE)
,
STMUK_2062
(cbiD)
,
STMUK_2063
(cbiC)
,
STMUK_2064
(cobD)
,
STMUK_2065
(cbiA)
View Structure
5
2241622-2241718
(-)
TPP
2240792-2241590 (-)
thiM
STMUK_2176
Operon
DOOR ID:
974360
STMUK_2174
(yegW)
,
STMUK_2175
(thiD)
,
STMUK_2176
(thiM)
View Structure
6
3324470-3324668
(-)
FMN
3323710-3324364 (-)
ribB
STMUK_3184
Single gene
DOOR ID:
3416860
STMUK_3184
(ribB)
View Structure
7
4309042-4309235
(+)
cobalamin
4309300-4311145 (+)
btuB
STMUK_4114
Operon
DOOR ID:
974747
STMUK_4114
(btuB)
,
STMUK_4115
(murI)
View Structure
8
4343659-4343822
(-)
TPP
4341677-4343573 (-)
thiC
STMUK_4148
Operon
DOOR ID:
974754
STMUK_4143
(thiH)
,
STMUK_4144
(thiG)
,
STMUK_4145,
STMUK_4146
(thiF)
,
STMUK_4147
(thiE)
,
STMUK_4148
(thiC)
View Structure
9
4541871-4541915
(+)
mini-ykkC
4541936-4542254 (+)
sugE
STMUK_4323
Single gene
DOOR ID:
3417265
STMUK_4323
(sugE)
View Structure
10
4659917-4660029
(+)
Mg sensor
4660125-4662834 (+)
mgtA
STMUK_4442
Single gene
DOOR ID:
3417313
STMUK_4442
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
(
NC_016863.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"126704-126803";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"125688-126672";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"STMUK_0109";i:14;s:6:"Operon";i:15;s:6:"973982";i:16;s:50:"STMUK_0107(thiQ);STMUK_0108(sfuB);STMUK_0109(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"870847-870991";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"871989-872502";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:10:"STMUK_0808";i:14;s:6:"Operon";i:15;s:6:"974122";i:16;s:101:"STMUK_0807(moaA);STMUK_0808(moaB);STMUK_0809(moaC);STMUK_0810(moaD);STMUK_0811(moaE);STMUK_0812(ybhL)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1891527-1891628";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1891685-1892306";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:10:"STMUK_1807";i:14;s:11:"Single gene";i:15;s:7:"3416375";i:16;s:16:"STMUK_1807(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2113642-2113817";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2112165-2113545";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:0:"";i:13;s:10:"STMUK_2065";i:14;s:6:"Operon";i:15;s:6:"974344";i:16;s:356:"STMUK_2045(erfK);STMUK_2046(cobT);STMUK_2047(cobS);STMUK_2048(cobU);STMUK_2049(cbiP);STMUK_2050(cbiO);STMUK_2051(cbiQ);STMUK_2052(cbiN);STMUK_2053(cbiM);STMUK_2054(cbiL);STMUK_2055(cbiK);STMUK_2056(cobK);STMUK_2057(cbiH);STMUK_2058(cbiG);STMUK_2059(cbiF);STMUK_2060(cbiT);STMUK_2061(cbiE);STMUK_2062(cbiD);STMUK_2063(cbiC);STMUK_2064(cobD);STMUK_2065(cbiA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2241622-2241718";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2240792-2241590";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:10:"STMUK_2176";i:14;s:6:"Operon";i:15;s:6:"974360";i:16;s:50:"STMUK_2174(yegW);STMUK_2175(thiD);STMUK_2176(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3324470-3324668";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3323710-3324364";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:10:"STMUK_3184";i:14;s:11:"Single gene";i:15;s:7:"3416860";i:16;s:16:"STMUK_3184(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4309042-4309235";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4309300-4311145";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"STMUK_4114";i:14;s:6:"Operon";i:15;s:6:"974747";i:16;s:33:"STMUK_4114(btuB);STMUK_4115(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4343659-4343822";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4341677-4343573";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:10:"STMUK_4148";i:14;s:6:"Operon";i:15;s:6:"974754";i:16;s:95:"STMUK_4143(thiH);STMUK_4144(thiG);STMUK_4145;STMUK_4146(thiF);STMUK_4147(thiE);STMUK_4148(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4541871-4541915";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4541936-4542254";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"STMUK_4323";i:14;s:11:"Single gene";i:15;s:7:"3417265";i:16;s:16:"STMUK_4323(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016863.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4659917-4660029";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4660125-4662834";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:10:"STMUK_4442";i:14;s:11:"Single gene";i:15;s:7:"3417313";i:16;s:16:"STMUK_4442(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}