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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126702-126801
(-)
TPP
125686-126670 (-)
tbpA
STMDT12_C01080
Operon
DOOR ID:
1222324
STMDT12_C01080
(tbpA)
,
STMDT12_C01070
(thiP)
,
STMDT12_C01060
(thiQ)
View Structure
2
909334-909478
(+)
MOCO
910476-910989 (+)
STMDT12_C08560
STMDT12_C08560
Operon
DOOR ID:
1222476
STMDT12_C08550
(moaA)
,
STMDT12_C08560,
STMDT12_C08570
(moaC)
,
STMDT12_C08580
(moaD)
,
STMDT12_C08590
(moaE)
,
STMDT12_C08600
View Structure
3
1929276-1929377
(+)
yybP-ykoY
1929434-1930055 (+)
STMDT12_C18540
STMDT12_C18540
Single gene
DOOR ID:
3414443
STMDT12_C18540
View Structure
4
2109439-2109614
(-)
cobalamin
2107962-2109342 (-)
cobD
STMDT12_C20570
Operon
DOOR ID:
1222704
STMDT12_C20380
(cobT)
,
STMDT12_C20390
(cobS)
,
STMDT12_C20400
(cobU)
,
STMDT12_C20410,
STMDT12_C20420
(cbiO)
,
STMDT12_C20430,
STMDT12_C20440,
STMDT12_C20450,
STMDT12_C20460,
STMDT12_C20470,
STMDT12_C20480,
STMDT12_C20490,
STMDT12_C20500,
STMDT12_C20510,
STMDT12_C20520,
STMDT12_C20530,
STMDT12_C20540
(cbiD)
,
STMDT12_C20550
(cbiC)
,
STMDT12_C20560
(cobD)
,
STMDT12_C20570
View Structure
5
2237419-2237515
(-)
TPP
2236589-2237387 (-)
STMDT12_C21680
STMDT12_C21680
Operon
DOOR ID:
1222720
STMDT12_C21660,
STMDT12_C21670,
STMDT12_C21680
View Structure
6
3381874-3382072
(-)
FMN
3381114-3381768 (-)
ribB
STMDT12_C32530
Single gene
DOOR ID:
3414926
STMDT12_C32530
(ribB)
View Structure
7
4452940-4453133
(+)
cobalamin
4453198-4455043 (+)
btuB
STMDT12_C42770
Operon
DOOR ID:
1223160
STMDT12_C42770
(btuB)
,
STMDT12_C42780
View Structure
8
4487559-4487722
(-)
TPP
4485577-4487473 (-)
STMDT12_C43010
STMDT12_C43010
Operon
DOOR ID:
1223167
STMDT12_C42960
(thiH)
,
STMDT12_C42970
(thiG)
,
STMDT12_C42980,
STMDT12_C42990,
STMDT12_C43000,
STMDT12_C43010
View Structure
9
4678828-4678872
(+)
mini-ykkC
4678893-4679211 (+)
sugE
STMDT12_C44700
Single gene
DOOR ID:
3415367
STMDT12_C44700
View Structure
10
4796861-4796973
(+)
Mg sensor
4797069-4799778 (+)
STMDT12_C45840
STMDT12_C45840
Single gene
DOOR ID:
3415413
STMDT12_C45840
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
(
NC_016860.1
);
Phylum:
Gammaproteobacteria
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T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"126702-126801";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"125686-126670";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:14:"STMDT12_C01080";i:14;s:6:"Operon";i:15;s:7:"1222324";i:16;s:62:"STMDT12_C01080(tbpA);STMDT12_C01070(thiP);STMDT12_C01060(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"909334-909478";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"910476-910989";i:10;s:1:"+";i:11;s:14:"STMDT12_C08560";i:12;s:0:"";i:13;s:14:"STMDT12_C08560";i:14;s:6:"Operon";i:15;s:7:"1222476";i:16;s:113:"STMDT12_C08550(moaA);STMDT12_C08560;STMDT12_C08570(moaC);STMDT12_C08580(moaD);STMDT12_C08590(moaE);STMDT12_C08600";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1929276-1929377";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1929434-1930055";i:10;s:1:"+";i:11;s:14:"STMDT12_C18540";i:12;s:0:"";i:13;s:14:"STMDT12_C18540";i:14;s:11:"Single gene";i:15;s:7:"3414443";i:16;s:14:"STMDT12_C18540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2109439-2109614";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2107962-2109342";i:10;s:1:"-";i:11;s:4:"cobD";i:12;s:0:"";i:13;s:14:"STMDT12_C20570";i:14;s:6:"Operon";i:15;s:7:"1222704";i:16;s:341:"STMDT12_C20380(cobT);STMDT12_C20390(cobS);STMDT12_C20400(cobU);STMDT12_C20410;STMDT12_C20420(cbiO);STMDT12_C20430;STMDT12_C20440;STMDT12_C20450;STMDT12_C20460;STMDT12_C20470;STMDT12_C20480;STMDT12_C20490;STMDT12_C20500;STMDT12_C20510;STMDT12_C20520;STMDT12_C20530;STMDT12_C20540(cbiD);STMDT12_C20550(cbiC);STMDT12_C20560(cobD);STMDT12_C20570";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2237419-2237515";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2236589-2237387";i:10;s:1:"-";i:11;s:14:"STMDT12_C21680";i:12;s:0:"";i:13;s:14:"STMDT12_C21680";i:14;s:6:"Operon";i:15;s:7:"1222720";i:16;s:44:"STMDT12_C21660;STMDT12_C21670;STMDT12_C21680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3381874-3382072";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3381114-3381768";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:14:"STMDT12_C32530";i:14;s:11:"Single gene";i:15;s:7:"3414926";i:16;s:20:"STMDT12_C32530(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4452940-4453133";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4453198-4455043";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:14:"STMDT12_C42770";i:14;s:6:"Operon";i:15;s:7:"1223160";i:16;s:35:"STMDT12_C42770(btuB);STMDT12_C42780";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4487559-4487722";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4485577-4487473";i:10;s:1:"-";i:11;s:14:"STMDT12_C43010";i:12;s:0:"";i:13;s:14:"STMDT12_C43010";i:14;s:6:"Operon";i:15;s:7:"1223167";i:16;s:101:"STMDT12_C42960(thiH);STMDT12_C42970(thiG);STMDT12_C42980;STMDT12_C42990;STMDT12_C43000;STMDT12_C43010";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4678828-4678872";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4678893-4679211";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:14:"STMDT12_C44700";i:14;s:11:"Single gene";i:15;s:7:"3415367";i:16;s:14:"STMDT12_C44700";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016860.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4796861-4796973";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4797069-4799778";i:10;s:1:"+";i:11;s:14:"STMDT12_C45840";i:12;s:0:"";i:13;s:14:"STMDT12_C45840";i:14;s:11:"Single gene";i:15;s:7:"3415413";i:16;s:14:"STMDT12_C45840";i:17;s:0:"";i:18;s:15:"View Structure ";}}