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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
127414-127513
(-)
TPP
126398-127382 (-)
tbpA
Thiamine transporter substrate binding subunit
STM14_0127
Operon
DOOR ID:
1220348
STM14_0130,
STM14_0129
(yabN)
,
STM14_0128,
STM14_0127
(tbpA)
,
STM14_0126
(thiP)
,
STM14_0125
(thiQ)
View Structure
2
870847-870991
(+)
MOCO
871989-872502 (+)
moaB
Molybdenum cofactor biosynthesis protein B
STM14_931
Operon
DOOR ID:
1220502
STM14_930
(moaA)
,
STM14_931
(moaB)
,
STM14_932
(moaC)
,
STM14_933
(moaD)
,
STM14_934
(moaE)
,
STM14_935
(ybhL)
View Structure
3
1943336-1943437
(+)
yybP-ykoY
1943494-1944115 (+)
yebN
Probable manganese efflux pump MntP
STM14_2216
Single gene
DOOR ID:
3410472
STM14_2216
(yebN)
View Structure
4
2165449-2165624
(-)
cobalamin
2163972-2165352 (-)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
STM14_2523
Operon
DOOR ID:
1220796
STM14_2504
(cobT)
,
STM14_2505
(cobS)
,
STM14_2506
(cobU)
,
STM14_2507
(cbiP)
,
STM14_2508
(cbiO)
,
STM14_2509
(cbiQ)
,
STM14_2510
(cbiN)
,
STM14_2511
(cbiM)
,
STM14_2512
(cbiL)
,
STM14_2513
(cbiK)
,
STM14_2514
(cbiJ)
,
STM14_2515
(cbiH)
,
STM14_2516
(cbiG)
,
STM14_2517
(cbiF)
,
STM14_2518
(cbiT)
,
STM14_2519
(cbiE)
,
STM14_2520
(cbiD)
,
STM14_2521
(cbiC)
,
STM14_2522
(cbiB)
,
STM14_2523
(cbiA)
View Structure
5
2293430-2293526
(-)
TPP
2292600-2293398 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
STM14_2648
Operon
DOOR ID:
1220814
STM14_2646
(yegW)
,
STM14_2647
(thiD)
,
STM14_2648
(thiM)
View Structure
6
3376863-3377061
(-)
FMN
3376103-3376757 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
STM14_3869
Single gene
DOOR ID:
3411047
STM14_3869
(ribB)
View Structure
7
4361436-4361629
(+)
cobalamin
4361694-4363539 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
STM14_4965
Operon
DOOR ID:
1221284
STM14_4965
(btuB)
,
STM14_4966
(murI)
View Structure
8
4396053-4396216
(-)
TPP
4394071-4395967 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
STM14_5005
Operon
DOOR ID:
1221292
STM14_5000
(thiH)
,
STM14_5001
(thiG)
,
STM14_5002,
STM14_5003
(thiF)
,
STM14_5004
(thiE)
,
STM14_5005
(thiC)
View Structure
9
4594265-4594309
(+)
mini-ykkC
4594330-4594648 (+)
sugE
STM14_5218
Single gene
DOOR ID:
3411506
STM14_5218
(sugE)
View Structure
10
4712312-4712424
(+)
Mg sensor
4712520-4715229 (+)
mgtA
Magnesium-transporting ATPase; P-type 1 (Mg(2+) transport ATPase; P-type 1)
STM14_5349
Single gene
DOOR ID:
3411552
STM14_5349
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
(
NC_016856.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"127414-127513";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"126398-127382";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:46:"Thiamine transporter substrate binding subunit";i:13;s:10:"STM14_0127";i:14;s:6:"Operon";i:15;s:7:"1220348";i:16;s:89:"STM14_0130;STM14_0129(yabN);STM14_0128;STM14_0127(tbpA);STM14_0126(thiP);STM14_0125(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"870847-870991";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"871989-872502";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"STM14_931";i:14;s:6:"Operon";i:15;s:7:"1220502";i:16;s:95:"STM14_930(moaA);STM14_931(moaB);STM14_932(moaC);STM14_933(moaD);STM14_934(moaE);STM14_935(ybhL)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1943336-1943437";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1943494-1944115";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"STM14_2216";i:14;s:11:"Single gene";i:15;s:7:"3410472";i:16;s:16:"STM14_2216(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2165449-2165624";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2163972-2165352";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"STM14_2523";i:14;s:6:"Operon";i:15;s:7:"1220796";i:16;s:339:"STM14_2504(cobT);STM14_2505(cobS);STM14_2506(cobU);STM14_2507(cbiP);STM14_2508(cbiO);STM14_2509(cbiQ);STM14_2510(cbiN);STM14_2511(cbiM);STM14_2512(cbiL);STM14_2513(cbiK);STM14_2514(cbiJ);STM14_2515(cbiH);STM14_2516(cbiG);STM14_2517(cbiF);STM14_2518(cbiT);STM14_2519(cbiE);STM14_2520(cbiD);STM14_2521(cbiC);STM14_2522(cbiB);STM14_2523(cbiA)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2293430-2293526";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2292600-2293398";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"STM14_2648";i:14;s:6:"Operon";i:15;s:7:"1220814";i:16;s:50:"STM14_2646(yegW);STM14_2647(thiD);STM14_2648(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3376863-3377061";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3376103-3376757";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"STM14_3869";i:14;s:11:"Single gene";i:15;s:7:"3411047";i:16;s:16:"STM14_3869(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4361436-4361629";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4361694-4363539";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"STM14_4965";i:14;s:6:"Operon";i:15;s:7:"1221284";i:16;s:33:"STM14_4965(btuB);STM14_4966(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4396053-4396216";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4394071-4395967";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"STM14_5005";i:14;s:6:"Operon";i:15;s:7:"1221292";i:16;s:95:"STM14_5000(thiH);STM14_5001(thiG);STM14_5002;STM14_5003(thiF);STM14_5004(thiE);STM14_5005(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4594265-4594309";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4594330-4594648";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"STM14_5218";i:14;s:11:"Single gene";i:15;s:7:"3411506";i:16;s:16:"STM14_5218(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016856.1";i:2;s:68:"Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4712312-4712424";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4712520-4715229";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:76:"Magnesium-transporting ATPase; P-type 1 (Mg(2+) transport ATPase; P-type 1)";i:13;s:10:"STM14_5349";i:14;s:11:"Single gene";i:15;s:7:"3411552";i:16;s:16:"STM14_5349(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}