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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126703-126802
(-)
TPP
125687-126671 (-)
STMMW_01141
STMMW_01141
Operon
DOOR ID:
972116
STMMW_01121,
STMMW_01131,
STMMW_01141
View Structure
2
909158-909302
(+)
MOCO
910300-910813 (+)
STMMW_08551
STMMW_08551
Operon
DOOR ID:
972269
STMMW_08541,
STMMW_08551,
STMMW_08561,
STMMW_08571,
STMMW_08581,
STMMW_08591,
STMMW_08601,
STMMW_08611,
STMMW_08621
View Structure
3
1925161-1925262
(+)
yybP-ykoY
1925373-1925940 (+)
STMMW_18261
STMMW_18261
Single gene
DOOR ID:
3408876
STMMW_18261
View Structure
4
2137553-2137728
(-)
cobalamin
2136076-2137456 (-)
STMMW_20661
STMMW_20661
Operon
DOOR ID:
972509
STMMW_20461,
STMMW_20471,
STMMW_20481,
STMMW_20491,
STMMW_20501,
STMMW_20511,
STMMW_20521,
STMMW_20531,
STMMW_20541,
STMMW_20551,
STMMW_20561,
STMMW_20571,
STMMW_20581,
STMMW_20591,
STMMW_20601,
STMMW_20611,
STMMW_20621,
STMMW_20631,
STMMW_20641,
STMMW_20651,
STMMW_20661
View Structure
5
2265533-2265629
(-)
TPP
2264703-2265501 (-)
STMMW_21781
STMMW_21781
Operon
DOOR ID:
972524
STMMW_21761,
STMMW_21771,
STMMW_21781
View Structure
6
3349853-3350051
(-)
FMN
3349093-3349747 (-)
STMMW_31561
STMMW_31561
Single gene
DOOR ID:
3409144
STMMW_31561
View Structure
7
4370606-4370799
(+)
cobalamin
4370864-4372709 (+)
STMMW_40941
STMMW_40941
Operon
DOOR ID:
972945
STMMW_40941,
STMMW_40951
View Structure
8
4405223-4405386
(-)
TPP
4403241-4405137 (-)
STMMW_41171
STMMW_41171
Operon
DOOR ID:
972950
STMMW_41121,
STMMW_41131,
STMMW_41141,
STMMW_41151,
STMMW_41161,
STMMW_41171
View Structure
9
4603422-4603466
(+)
mini-ykkC
4603487-4603805 (+)
STMMW_42861
STMMW_42861
Single gene
DOOR ID:
3409384
STMMW_42861
View Structure
10
4721469-4721581
(+)
Mg sensor
4721677-4724386 (+)
STMMW_44011
STMMW_44011
Single gene
DOOR ID:
3409413
STMMW_44011
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
(
NC_016854.1
);
Phylum:
Gammaproteobacteria
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D23580";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2137553-2137728";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2136076-2137456";i:10;s:1:"-";i:11;s:11:"STMMW_20661";i:12;s:0:"";i:13;s:11:"STMMW_20661";i:14;s:6:"Operon";i:15;s:6:"972509";i:16;s:251:"STMMW_20461;STMMW_20471;STMMW_20481;STMMW_20491;STMMW_20501;STMMW_20511;STMMW_20521;STMMW_20531;STMMW_20541;STMMW_20551;STMMW_20561;STMMW_20571;STMMW_20581;STMMW_20591;STMMW_20601;STMMW_20611;STMMW_20621;STMMW_20631;STMMW_20641;STMMW_20651;STMMW_20661";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016854.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Typhimurium str. 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D23580";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4370606-4370799";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4370864-4372709";i:10;s:1:"+";i:11;s:11:"STMMW_40941";i:12;s:0:"";i:13;s:11:"STMMW_40941";i:14;s:6:"Operon";i:15;s:6:"972945";i:16;s:23:"STMMW_40941;STMMW_40951";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016854.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Typhimurium str. D23580";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4405223-4405386";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4403241-4405137";i:10;s:1:"-";i:11;s:11:"STMMW_41171";i:12;s:0:"";i:13;s:11:"STMMW_41171";i:14;s:6:"Operon";i:15;s:6:"972950";i:16;s:71:"STMMW_41121;STMMW_41131;STMMW_41141;STMMW_41151;STMMW_41161;STMMW_41171";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016854.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Typhimurium str. 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