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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
117343-117530
(+)
cobalamin
117594-119433 (+)
KPHS_01080
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
KPHS_01080
Operon
DOOR ID:
1219298
KPHS_01090,
KPHS_01080
View Structure
2
245563-245687
(-)
TPP
243581-245477 (-)
KPHS_02130
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
KPHS_02130
Operon
DOOR ID:
1219319
KPHS_02130,
KPHS_02120,
KPHS_02110,
KPHS_02100,
KPHS_02090,
KPHS_02080
View Structure
3
286819-287054
(-)
lysine
285289-286639 (-)
KPHS_02460
Aspartokinase
KPHS_02460
Single gene
DOOR ID:
3406327
KPHS_02460
View Structure
4
432082-432126
(+)
mini-ykkC
432139-432457 (+)
KPHS_03950
KPHS_03950
Single gene
DOOR ID:
3406402
KPHS_03950
View Structure
5
535524-535640
(+)
Mg sensor
535738-538447 (+)
KPHS_05010
Magnesium-transporting ATPase MgtA
KPHS_05010
Single gene
DOOR ID:
3406452
KPHS_05010
View Structure
6
828034-828163
(-)
TPP
827016-828000 (-)
KPHS_07810
Thiamin/thiamine pyrophosphate ABC superfamily ATP binding cassette transporter; binding protein
KPHS_07810
Operon
DOOR ID:
1219437
KPHS_07810,
KPHS_07800,
KPHS_07790
View Structure
7
1699025-1699163
(+)
MOCO
1700163-1700676 (+)
KPHS_16380
Molybdenum cofactor biosynthesis protein B
KPHS_16380
Operon
DOOR ID:
1219617
KPHS_16370,
KPHS_16380,
KPHS_16390,
KPHS_16400,
KPHS_16410,
KPHS_16420
View Structure
8
1899900-1899954
(-)
fluoride
1894906-1899355 (+)
KPHS_18320
Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)
KPHS_18320
Operon
DOOR ID:
1219657
KPHS_18280,
KPHS_18290,
KPHS_18300,
KPHS_18310,
KPHS_18320
View Structure
9
2757246-2757347
(+)
TPP
2757415-2758111 (+)
KPHS_27520
Aminopyrimidine aminohydrolase
KPHS_27520
Operon
DOOR ID:
1219821
KPHS_27520,
KPHS_27530,
KPHS_27540,
KPHS_27550
View Structure
10
3332250-3332352
(+)
yybP-ykoY
3332469-3333036 (+)
KPHS_33510
Putative manganese efflux pump MntP
KPHS_33510
Single gene
DOOR ID:
3407604
KPHS_33510
View Structure
11
3630789-3630886
(-)
TPP
3629980-3630754 (-)
KPHS_36110
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
KPHS_36110
Operon
DOOR ID:
1219979
KPHS_36100,
KPHS_36110
View Structure
12
4297869-4298047
(-)
cobalamin
4296399-4297776 (-)
KPHS_42640
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
KPHS_42640
Operon
DOOR ID:
1220112
KPHS_42460,
KPHS_42470,
KPHS_42480,
KPHS_42490,
KPHS_42500,
KPHS_42510,
KPHS_42520,
KPHS_42530,
KPHS_42540,
KPHS_42550,
KPHS_42560,
KPHS_42570,
KPHS_42580,
KPHS_42590,
KPHS_42600,
KPHS_42610,
KPHS_42620,
KPHS_42630,
KPHS_42640
View Structure
13
4607326-4607477
(-)
FMN
4606566-4607220 (-)
KPHS_45810
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
KPHS_45810
Single gene
DOOR ID:
3408100
KPHS_45810
View Structure
14
5013317-5013498
(+)
ykoK
5013555-5014569 (+)
KPHS_50110
Magnesium transporter
KPHS_50110
Single gene
DOOR ID:
3408246
KPHS_50110
View Structure
Genome:
Klebsiella pneumoniae subsp. pneumoniae HS11286
(
NC_016845.1
);
Phylum:
Gammaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"117343-117530";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"117594-119433";i:10;s:1:"+";i:11;s:10:"KPHS_01080";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"KPHS_01080";i:14;s:6:"Operon";i:15;s:7:"1219298";i:16;s:21:"KPHS_01090;KPHS_01080";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"245563-245687";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"243581-245477";i:10;s:1:"-";i:11;s:10:"KPHS_02130";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"KPHS_02130";i:14;s:6:"Operon";i:15;s:7:"1219319";i:16;s:65:"KPHS_02130;KPHS_02120;KPHS_02110;KPHS_02100;KPHS_02090;KPHS_02080";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"286819-287054";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"285289-286639";i:10;s:1:"-";i:11;s:10:"KPHS_02460";i:12;s:14:"Aspartokinase ";i:13;s:10:"KPHS_02460";i:14;s:11:"Single gene";i:15;s:7:"3406327";i:16;s:10:"KPHS_02460";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"432082-432126";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"432139-432457";i:10;s:1:"+";i:11;s:10:"KPHS_03950";i:12;s:0:"";i:13;s:10:"KPHS_03950";i:14;s:11:"Single gene";i:15;s:7:"3406402";i:16;s:10:"KPHS_03950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"535524-535640";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:13:"535738-538447";i:10;s:1:"+";i:11;s:10:"KPHS_05010";i:12;s:34:"Magnesium-transporting ATPase MgtA";i:13;s:10:"KPHS_05010";i:14;s:11:"Single gene";i:15;s:7:"3406452";i:16;s:10:"KPHS_05010";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"828034-828163";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"827016-828000";i:10;s:1:"-";i:11;s:10:"KPHS_07810";i:12;s:96:"Thiamin/thiamine pyrophosphate ABC superfamily ATP binding cassette transporter; binding protein";i:13;s:10:"KPHS_07810";i:14;s:6:"Operon";i:15;s:7:"1219437";i:16;s:32:"KPHS_07810;KPHS_07800;KPHS_07790";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1699025-1699163";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1700163-1700676";i:10;s:1:"+";i:11;s:10:"KPHS_16380";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"KPHS_16380";i:14;s:6:"Operon";i:15;s:7:"1219617";i:16;s:65:"KPHS_16370;KPHS_16380;KPHS_16390;KPHS_16400;KPHS_16410;KPHS_16420";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1899900-1899954";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1894906-1899355";i:10;s:1:"+";i:11;s:10:"KPHS_18320";i:12;s:88:"Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)";i:13;s:10:"KPHS_18320";i:14;s:6:"Operon";i:15;s:7:"1219657";i:16;s:54:"KPHS_18280;KPHS_18290;KPHS_18300;KPHS_18310;KPHS_18320";i:17;s:156:"cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome condensation [GO:0030261]; chromosome segregation [GO:0007059]; DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2757246-2757347";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2757415-2758111";i:10;s:1:"+";i:11;s:10:"KPHS_27520";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:10:"KPHS_27520";i:14;s:6:"Operon";i:15;s:7:"1219821";i:16;s:43:"KPHS_27520;KPHS_27530;KPHS_27540;KPHS_27550";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3332250-3332352";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3332469-3333036";i:10;s:1:"+";i:11;s:10:"KPHS_33510";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"KPHS_33510";i:14;s:11:"Single gene";i:15;s:7:"3407604";i:16;s:10:"KPHS_33510";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3630789-3630886";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3629980-3630754";i:10;s:1:"-";i:11;s:10:"KPHS_36110";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"KPHS_36110";i:14;s:6:"Operon";i:15;s:7:"1219979";i:16;s:21:"KPHS_36100;KPHS_36110";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4297869-4298047";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4296399-4297776";i:10;s:1:"-";i:11;s:10:"KPHS_42640";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"KPHS_42640";i:14;s:6:"Operon";i:15;s:7:"1220112";i:16;s:208:"KPHS_42460;KPHS_42470;KPHS_42480;KPHS_42490;KPHS_42500;KPHS_42510;KPHS_42520;KPHS_42530;KPHS_42540;KPHS_42550;KPHS_42560;KPHS_42570;KPHS_42580;KPHS_42590;KPHS_42600;KPHS_42610;KPHS_42620;KPHS_42630;KPHS_42640";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4607326-4607477";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4606566-4607220";i:10;s:1:"-";i:11;s:10:"KPHS_45810";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"KPHS_45810";i:14;s:11:"Single gene";i:15;s:7:"3408100";i:16;s:10:"KPHS_45810";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016845.1";i:2;s:48:"Klebsiella pneumoniae subsp. pneumoniae HS11286 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5013317-5013498";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5013555-5014569";i:10;s:1:"+";i:11;s:10:"KPHS_50110";i:12;s:21:"Magnesium transporter";i:13;s:10:"KPHS_50110";i:14;s:11:"Single gene";i:15;s:7:"3408246";i:16;s:10:"KPHS_50110";i:17;s:0:"";i:18;s:15:"View Structure ";}}