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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
637285-637390
(+)
TPP
637551-639441 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSF113_0531
Single gene
DOOR ID:
3401551
PSF113_0531
(thiC)
View Structure
2
1153078-1153198
(-)
yybP-ykoY
1152403-1152988 (-)
PSF113_0960
Putative transmembrane protein
PSF113_0960
Single gene
DOOR ID:
3401699
PSF113_0960
View Structure
3
1620012-1620058
(-)
mini-ykkC
1616328-1619970 (-)
uahA
PSF113_1393
Operon
DOOR ID:
1217477
PSF113_1393
(uahA)
,
PSF113_1392
View Structure
4
1624392-1624493
(-)
ykkC-yxkD
1623263-1624331 (-)
PSF113_1398
Urea carboxylase-related ABC transporter; periplasmic substrate-binding protein
PSF113_1398
Operon
DOOR ID:
1217479
PSF113_1398,
PSF113_1397,
PSF113_1396
View Structure
5
3830535-3830758
(-)
cobalamin
3830246-3830435 (-)
PSF113_3251
PSF113_3251
Operon
DOOR ID:
1217824
PSF113_3249
(cobE)
,
PSF113_3250
(cbtA)
,
PSF113_3251
View Structure
6
3830972-3831186
(+)
cobalamin
3831283-3832348 (+)
cobW
CobW
PSF113_3252
Operon
DOOR ID:
1217825
PSF113_3252
(cobW)
,
PSF113_3253
(cobN)
View Structure
7
5098465-5098517
(+)
mini-ykkC
5098536-5098851 (+)
sugE2
PSF113_4375
Single gene
DOOR ID:
3403169
PSF113_4375
(sugE2)
View Structure
8
5151625-5151852
(-)
cobalamin
5150918-5151545 (-)
PSF113_4410
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
PSF113_4410
Operon
DOOR ID:
1218054
PSF113_4405,
PSF113_4406,
PSF113_4407,
PSF113_4408
(bluB)
,
PSF113_4409,
PSF113_4410
View Structure
9
5237867-5238035
(+)
FMN
5238135-5238645 (+)
PSF113_4482
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
PSF113_4482
Single gene
DOOR ID:
3403218
PSF113_4482
View Structure
10
6225048-6225102
(-)
SAH
6223179-6223974 (+)
PSF113_5382
Nitrilase cyanide hydratase and apolipoprotein n-acyltransferase
PSF113_5382
Operon
DOOR ID:
1218251
PSF113_5381,
PSF113_5382,
PSF113_5383
(pqqF)
View Structure
11
6367565-6367671
(+)
SAH
6367694-6369104 (+)
sahA
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PSF113_5501
Single gene
DOOR ID:
3403638
PSF113_5501
(sahA)
View Structure
Genome:
Pseudomonas fluorescens F113
(
NC_016830.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1153078-1153198";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1152403-1152988";i:10;s:1:"-";i:11;s:11:"PSF113_0960";i:12;s:30:"Putative transmembrane protein";i:13;s:11:"PSF113_0960";i:14;s:11:"Single gene";i:15;s:7:"3401699";i:16;s:11:"PSF113_0960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1620012-1620058";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1616328-1619970";i:10;s:1:"-";i:11;s:4:"uahA";i:12;s:0:"";i:13;s:11:"PSF113_1393";i:14;s:6:"Operon";i:15;s:7:"1217477";i:16;s:29:"PSF113_1393(uahA);PSF113_1392";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1624392-1624493";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1623263-1624331";i:10;s:1:"-";i:11;s:11:"PSF113_1398";i:12;s:79:"Urea carboxylase-related ABC transporter; periplasmic substrate-binding protein";i:13;s:11:"PSF113_1398";i:14;s:6:"Operon";i:15;s:7:"1217479";i:16;s:35:"PSF113_1398;PSF113_1397;PSF113_1396";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3830535-3830758";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3830246-3830435";i:10;s:1:"-";i:11;s:11:"PSF113_3251";i:12;s:0:"";i:13;s:11:"PSF113_3251";i:14;s:6:"Operon";i:15;s:7:"1217824";i:16;s:47:"PSF113_3249(cobE);PSF113_3250(cbtA);PSF113_3251";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3830972-3831186";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3831283-3832348";i:10;s:1:"+";i:11;s:4:"cobW";i:12;s:4:"CobW";i:13;s:11:"PSF113_3252";i:14;s:6:"Operon";i:15;s:7:"1217825";i:16;s:35:"PSF113_3252(cobW);PSF113_3253(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5098465-5098517";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5098536-5098851";i:10;s:1:"+";i:11;s:5:"sugE2";i:12;s:0:"";i:13;s:11:"PSF113_4375";i:14;s:11:"Single gene";i:15;s:7:"3403169";i:16;s:18:"PSF113_4375(sugE2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5151625-5151852";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5150918-5151545";i:10;s:1:"-";i:11;s:11:"PSF113_4410";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:11:"PSF113_4410";i:14;s:6:"Operon";i:15;s:7:"1218054";i:16;s:77:"PSF113_4405;PSF113_4406;PSF113_4407;PSF113_4408(bluB);PSF113_4409;PSF113_4410";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5237867-5238035";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5238135-5238645";i:10;s:1:"+";i:11;s:11:"PSF113_4482";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"PSF113_4482";i:14;s:11:"Single gene";i:15;s:7:"3403218";i:16;s:11:"PSF113_4482";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6225048-6225102";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6223179-6223974";i:10;s:1:"+";i:11;s:11:"PSF113_5382";i:12;s:64:"Nitrilase cyanide hydratase and apolipoprotein n-acyltransferase";i:13;s:11:"PSF113_5382";i:14;s:6:"Operon";i:15;s:7:"1218251";i:16;s:41:"PSF113_5381;PSF113_5382;PSF113_5383(pqqF)";i:17;s:48:"nitrogen compound metabolic process [GO:0006807]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016830.1";i:2;s:29:"Pseudomonas fluorescens F113 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6367565-6367671";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6367694-6369104";i:10;s:1:"+";i:11;s:4:"sahA";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"PSF113_5501";i:14;s:11:"Single gene";i:15;s:7:"3403638";i:16;s:17:"PSF113_5501(sahA)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
