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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
219583-219766
(+)
cobalamin
219832-221689 (+)
btuB
PANA5342_0203
Operon
DOOR ID:
1215541
PANA5342_0204
(murI)
,
PANA5342_0203
(btuB)
View Structure
2
268353-268429
(+)
fluoride
268522-268900 (+)
crcB1
PANA5342_0242
Operon
DOOR ID:
1215546
PANA5342_0242
(crcB1)
,
PANA5342_0241
View Structure
3
702472-702620
(+)
FMN
702730-703387 (+)
ribB
PANA5342_0681
Single gene
DOOR ID:
3394796
PANA5342_0681
(ribB)
View Structure
4
1417070-1417138
(-)
SAH
1415964-1417050 (+)
aroC
PANA5342_1366
Operon
DOOR ID:
1215773
PANA5342_1365
(yfcB)
,
PANA5342_1366
(aroC)
,
PANA5342_1367
(mepA)
,
PANA5342_1368
(yfcA)
,
PANA5342_1369
(yfcM)
,
PANA5342_1370
(yfcL)
View Structure
5
1637145-1637241
(+)
TPP
1637999-1638860 (+)
thiD
PANA5342_1558
Operon
DOOR ID:
1215816
PANA5342_1557
(thiM)
,
PANA5342_1558
(thiD)
View Structure
6
2712532-2712705
(-)
ykoK
2711438-2712458 (-)
mgtE3
PANA5342_2591
Single gene
DOOR ID:
3395518
PANA5342_2591
(mgtE3)
View Structure
7
3206185-3206318
(-)
MOCO
3204678-3205194 (-)
moaB
PANA5342_3066
Operon
DOOR ID:
1216093
PANA5342_3063
(moaE)
,
PANA5342_3064
(moaD)
,
PANA5342_3065
(moaC)
,
PANA5342_3066
(moaB)
,
PANA5342_3067
(moaA)
View Structure
8
3789158-3789262
(+)
TPP
3789305-3790292 (+)
tbpA
PANA5342_3617
Operon
DOOR ID:
1216202
PANA5342_3617
(tbpA)
,
PANA5342_3618
(thiP)
,
PANA5342_3619
(thiQ)
View Structure
9
4162607-4162676
(+)
fluoride
4162754-4163663 (+)
ppaC
PANA5342_3943
Operon
DOOR ID:
1216263
PANA5342_3943
(ppaC)
,
PANA5342_3944
(uspA5)
,
PANA5342_3945
(eno3)
,
PANA5342_3946
(gpmA3)
,
PANA5342_3947
(crcB3)
View Structure
10
4400653-4400845
(-)
lysine
4399189-4400542 (-)
lysC
PANA5342_4176
Single gene
DOOR ID:
3396172
PANA5342_4176
(lysC)
View Structure
11
4441171-4441269
(+)
TPP
4441354-4443277 (+)
thiC
PANA5342_4206
Operon
DOOR ID:
1216317
PANA5342_4206
(thiC)
,
PANA5342_4207
(thiE)
View Structure
Genome:
Pantoea ananatis LMG 5342
(
NC_016816.1
);
Phylum:
Gammaproteobacteria
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