About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
929479-929583
(-)
TPP
929198-929399 (-)
DND132_0868
Thiamine biosynthesis protein ThiS
DND132_0868
Operon
DOOR ID:
965414
DND132_0863,
DND132_0864,
DND132_0865,
DND132_0866,
DND132_0867,
DND132_0868
View Structure
2
1354419-1354594
(+)
cobalamin
1354768-1356868 (+)
DND132_1225
Anaerobic ribonucleoside-triphosphate reductase
DND132_1225
Operon
DOOR ID:
965490
DND132_1225,
DND132_1226
View Structure
3
1930826-1930974
(-)
FMN
1929968-1930703 (-)
DND132_1733
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
DND132_1733
Single gene
DOOR ID:
3385626
DND132_1733
View Structure
4
2073283-2073357
(-)
c-di-GMP-I
2072199-2073219 (-)
DND132_1864
Metal dependent phosphohydrolase
DND132_1864
single gene
DOOR ID:
3385683
DND132_1864
View Structure
5
3762439-3762616
(-)
cobalamin
3761338-3762313 (-)
DND132_3366
Sirohydrochlorin cobaltochelatase
DND132_3366
Operon
DOOR ID:
965961
DND132_3363,
DND132_3364,
DND132_3365,
DND132_3366
View Structure
Genome:
Desulfovibrio desulfuricans ND132
(
NC_016803.1
);
Phylum:
delta/epsilon subdivisions
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016803.1";i:2;s:34:"Desulfovibrio desulfuricans ND132 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"929479-929583";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"929198-929399";i:10;s:1:"-";i:11;s:11:"DND132_0868";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:11:"DND132_0868";i:14;s:6:"Operon";i:15;s:6:"965414";i:16;s:71:"DND132_0863;DND132_0864;DND132_0865;DND132_0866;DND132_0867;DND132_0868";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016803.1";i:2;s:34:"Desulfovibrio desulfuricans ND132 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1354419-1354594";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1354768-1356868";i:10;s:1:"+";i:11;s:11:"DND132_1225";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:11:"DND132_1225";i:14;s:6:"Operon";i:15;s:6:"965490";i:16;s:23:"DND132_1225;DND132_1226";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016803.1";i:2;s:34:"Desulfovibrio desulfuricans ND132 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1930826-1930974";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1929968-1930703";i:10;s:1:"-";i:11;s:11:"DND132_1733";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"DND132_1733";i:14;s:11:"Single gene";i:15;s:7:"3385626";i:16;s:11:"DND132_1733";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016803.1";i:2;s:34:"Desulfovibrio desulfuricans ND132 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2073283-2073357";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2072199-2073219";i:10;s:1:"-";i:11;s:11:"DND132_1864";i:12;s:32:"Metal dependent phosphohydrolase";i:13;s:11:"DND132_1864";i:14;s:11:"single gene";i:15;s:7:"3385683";i:16;s:11:"DND132_1864";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016803.1";i:2;s:34:"Desulfovibrio desulfuricans ND132 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3762439-3762616";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3761338-3762313";i:10;s:1:"-";i:11;s:11:"DND132_3366";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:11:"DND132_3366";i:14;s:6:"Operon";i:15;s:6:"965961";i:16;s:47:"DND132_3363;DND132_3364;DND132_3365;DND132_3366";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}}
