Genome: Clostridium sp. BNL1100 (NC_016791.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 86068-86169 (+)SAM86272-87463 (+)Clo1100_0083

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Clo1100_0083Single gene

DOOR ID: 3378566		Clo1100_0083 View Structure
2 784822-784868 (+)PreQ1784990-785989 (+)Clo1100_0707

Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit; BcrC/BadD/HgdB		Clo1100_0707Operon

DOOR ID: 962309		Clo1100_0707,
Clo1100_0708,
Clo1100_0709,
Clo1100_0710		 View Structure
3 876245-876347 (-)ykkC-yxkD875863-876184 (-)Clo1100_0779

Cation/cationic drug transporter		Clo1100_0779Single gene

DOOR ID: 3378658		Clo1100_0779 View Structure
4 1134402-1134614 (+)cobalamin1134781-1135528 (+)Clo1100_0946

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Clo1100_0946Operon

DOOR ID: 962352		Clo1100_0946,
Clo1100_0947,
Clo1100_0948,
Clo1100_0949,
Clo1100_0950,
Clo1100_0951,
Clo1100_0952,
Clo1100_0953,
Clo1100_0954,
Clo1100_0955,
Clo1100_0956,
Clo1100_0957,
Clo1100_0958,
Clo1100_0959,
Clo1100_0960,
Clo1100_0961,
Clo1100_0962,
Clo1100_0963,
Clo1100_0964,
Clo1100_0965,
Clo1100_0966,
Clo1100_0967,
Clo1100_0968,
Clo1100_0969,
Clo1100_0970		 View Structure
5 1299120-1299227 (+)THF1299316-1299841 (+)Clo1100_1100

Clo1100_1100Operon

DOOR ID: 962379		Clo1100_1100,
Clo1100_1101		 View Structure
6 1310541-1310642 (+)purine1310825-1311398 (+)Clo1100_1109

Xanthine phosphoribosyltransferase (XPRTase) (2)		Clo1100_1109Operon

DOOR ID: 962381		Clo1100_1109,
Clo1100_1110,
Clo1100_1111,
Clo1100_1112,
Clo1100_1113,
Clo1100_1114,
Clo1100_1115,
Clo1100_1116,
Clo1100_1117,
Clo1100_1118,
Clo1100_1119,
Clo1100_1120,
Clo1100_1121		 View Structure
7 1803459-1803602 (+)ydaO-yuaA1803742-1804600 (+)Clo1100_1545

4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) 		Clo1100_1545Operon

DOOR ID: 962450		Clo1100_1545,
Clo1100_1546		 View Structure
8 1820530-1820712 (-)lysine1819556-1820438 (-)Clo1100_1558

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Clo1100_1558Operon

DOOR ID: 962452		Clo1100_1556,
Clo1100_1557,
Clo1100_1558		 View Structure
9 2127235-2127375 (+)ydaO-yuaA2127375-2128272 (+)Clo1100_1837

Cell wall-associated hydrolase; invasion-associated protein		Clo1100_1837Single gene

DOOR ID: 3378818		Clo1100_1837 View Structure
10 2259909-2260027 (-)yybP-ykoY2259021-2259861 (-)Clo1100_1946

Integral membrane protein; TerC family		Clo1100_1946Single gene

DOOR ID: 3378843		Clo1100_1946 View Structure
11 2315903-2316002 (-)Nico2313330-2315835 (-)Clo1100_1992

Cation transport ATPase		Clo1100_1992Single gene

DOOR ID: 3378853		Clo1100_1992 View Structure
12 2630061-2630202 (-)ydaO-yuaA2629165-2630056 (-)Clo1100_2301

Cell wall-associated hydrolase; invasion-associated protein		Clo1100_2301Operon

DOOR ID: 962582		Clo1100_2298,
Clo1100_2299,
Clo1100_2300,
Clo1100_2301		 View Structure
13 2683225-2683324 (-)TPP2682296-2683109 (-)Clo1100_2347

Phosphomethylpyrimidine kinase		Clo1100_2347Operon

DOOR ID: 962590		Clo1100_2344,
Clo1100_2345,
Clo1100_2346,
Clo1100_2347		 View Structure
14 2683396-2683493 (-)TPP2682296-2683109 (-)Clo1100_2347

Phosphomethylpyrimidine kinase		Clo1100_2347Operon

DOOR ID: 962590		Clo1100_2344,
Clo1100_2345,
Clo1100_2346,
Clo1100_2347		 View Structure
15 2695641-2695809 (-)ykoK2694491-2695421 (-)Clo1100_2360

Mg2+/Co2+ transporter		Clo1100_2360Single gene

DOOR ID: 3378901		Clo1100_2360 View Structure
16 2699505-2699630 (-)FMN2698318-2699422 (-)Clo1100_2365

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Clo1100_2365Operon

DOOR ID: 962593		Clo1100_2362,
Clo1100_2363,
Clo1100_2364,
Clo1100_2365		 View Structure
17 2862360-2862472 (+)TPP2862533-2863067 (+)Clo1100_2525

Putative proton-coupled thiamine transporter YuaJ		Clo1100_2525Single gene

DOOR ID: 3378919		Clo1100_2525 View Structure
18 2870961-2871146 (+)ydaO-yuaA2871147-2871855 (+)Clo1100_2534

Cell wall-associated hydrolase; invasion-associated protein		Clo1100_2534Single gene

DOOR ID: 3378922		Clo1100_2534 View Structure
19 3042609-3042688 (+)ZMP-ZTP3042776-3045005 (+)Clo1100_2669

Formate acetyltransferase 1		Clo1100_2669Single gene

DOOR ID: 3378940		Clo1100_2669 View Structure
20 3268664-3268845 (-)glmS3266587-3268414 (-)Clo1100_2845

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Clo1100_2845Operon

DOOR ID: 962674		Clo1100_2845,
Clo1100_2846		 View Structure
21 3911792-3911879 (-)c-di-GMP-I3910788-3911199 (-)Clo1100_3415

DNA-directed RNA polymerase specialized sigma subunit; sigma24		Clo1100_3415single gene

DOOR ID: 3379037		Clo1100_3415 View Structure
22 3968211-3968302 (-)c-di-GMP-I3967346-3967796 (-)Clo1100_3482

DNA-directed RNA polymerase specialized sigma subunit; sigma24		Clo1100_3482single gene

DOOR ID: 3379042		Clo1100_3482 View Structure
23 4006361-4006465 (+)Nico4006577-4009100 (+)Clo1100_3526

P-type ATPase; translocating		Clo1100_3526Single gene

DOOR ID: 3379043		Clo1100_3526 View Structure
24 4326105-4326267 (-)cobalamin4324966-4325971 (-)Clo1100_3858

ABC-type Fe3+-hydroxamate transport system; periplasmic component		Clo1100_3858Operon

DOOR ID: 962846		Clo1100_3856,
Clo1100_3857,
Clo1100_3858		 View Structure
25 4488482-4488610 (+)FMN4488710-4489262 (+)Clo1100_4007

Riboflavin transporter		Clo1100_4007Single gene

DOOR ID: 3379122		Clo1100_4007 View Structure