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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
729872-729967
(-)
TPP
727652-729872 (-)
BF638R_0611
Putative TonB-dependent transmembrane receptor protein
BF638R_0611
Operon
DOOR ID:
1212281
BF638R_0611,
BF638R_0610
(pnuC)
,
BF638R_0609
View Structure
2
1850314-1850522
(-)
cobalamin
1848107-1850144 (-)
btuB
Putative vitamin B12 receptor
BF638R_1581
Operon
DOOR ID:
1212503
BF638R_1583,
BF638R_1582,
BF638R_1581
(btuB)
,
BF638R_1580
View Structure
3
2106910-2107102
(+)
cobalamin
2107256-2108174 (+)
BF638R_1789
BF638R_1789
Single gene
DOOR ID:
3364650
BF638R_1789
View Structure
4
2940518-2940729
(-)
cobalamin
2938480-2940169 (-)
BF638R_2500
Putative membrane protein
BF638R_2500
Single gene
DOOR ID:
3364860
BF638R_2500
View Structure
5
2941013-2941260
(+)
cobalamin
2941315-2943388 (+)
BF638R_2501
Putative iron transport-related exported protein
BF638R_2501
Single gene
DOOR ID:
3364861
BF638R_2501
View Structure
6
3000465-3000557
(+)
TPP
3000627-3000825 (+)
BF638R_2546
Putative thiamine biosynthesis-related protein
BF638R_2546
Operon
DOOR ID:
1212707
BF638R_2546,
BF638R_2547
View Structure
7
3172413-3172620
(-)
cobalamin
3171371-3172349 (-)
BF638R_2703
BF638R_2703
Single gene
DOOR ID:
3364924
BF638R_2703
View Structure
8
3195087-3195309
(+)
cobalamin
3195373-3197893 (+)
BF638R_2722
Ribonucleoside-diphosphate reductase
BF638R_2722
Operon
DOOR ID:
1212747
BF638R_2722,
BF638R_2723
View Structure
9
3977837-3978056
(+)
cobalamin
3978193-3979708 (+)
accC2
Putative biotin carboxylase 2 (4)
BF638R_3365
Operon
DOOR ID:
1212883
BF638R_3365
(accC2)
,
BF638R_3366,
BF638R_3367
View Structure
10
4139260-4139443
(+)
cobalamin
4139476-4141870 (+)
BF638R_3508
Putative anaerobic ribonucleoside-triphosphate reductase
BF638R_3508
Operon
DOOR ID:
1212907
BF638R_3508,
BF638R_3509
View Structure
Genome:
Bacteroides fragilis 638R
(
NC_016776.1
);
Phylum:
Bacteroidetes/Chlorobi group
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