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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
371225-371326
(+)
purine
371401-371812 (+)
Marpi_0378
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Marpi_0378
Operon
DOOR ID:
1325738
Marpi_0387,
Marpi_0386,
Marpi_0385,
Marpi_0384,
Marpi_0383,
Marpi_0382,
Marpi_0381,
Marpi_0380,
Marpi_0379,
Marpi_0378
View Structure
2
532276-532377
(+)
purine
532441-533956 (+)
Marpi_0534
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Marpi_0534
Operon
DOOR ID:
1325765
Marpi_0535,
Marpi_0534
View Structure
3
589077-589253
(-)
lysine
587998-588967 (-)
Marpi_0585
Aspartate-semialdehyde dehydrogenase
Marpi_0585
Operon
DOOR ID:
1325777
Marpi_0585,
Marpi_0584,
Marpi_0583,
Marpi_0582,
Marpi_0581,
Marpi_0580,
Marpi_0579,
Marpi_0578
View Structure
4
881709-881819
(+)
TPP
881874-882072 (+)
Marpi_0887
Thiamine biosynthesis protein ThiS
Marpi_0887
Operon
DOOR ID:
1325832
Marpi_0891,
Marpi_0890,
Marpi_0889,
Marpi_0888,
Marpi_0887
View Structure
5
931042-931157
(+)
FMN
931277-932462 (+)
Marpi_0932
GTP cyclohydrolase-2 (5) (GTP cyclohydrolase II)
Marpi_0932
Operon
DOOR ID:
1325840
Marpi_0935,
Marpi_0934,
Marpi_0933,
Marpi_0932
View Structure
6
1008559-1008735
(-)
cobalamin
1007621-1008506 (-)
Marpi_1005
ABC-type Fe3+-hydroxamate transport system; periplasmic component
Marpi_1005
Operon
DOOR ID:
1325855
Marpi_1005,
Marpi_1004,
Marpi_1003,
Marpi_1002
View Structure
7
1093939-1094117
(+)
cobalamin
1094169-1095192 (+)
Marpi_1069
Succinyl-CoA synthetase; beta subunit
Marpi_1069
Operon
DOOR ID:
1325867
Marpi_1070,
Marpi_1069
View Structure
8
1165922-1166044
(+)
MOCO
1166053-1167853 (+)
Marpi_1140
Aldehyde:ferredoxin oxidoreductase
Marpi_1140
Operon
DOOR ID:
1325882
Marpi_1141,
Marpi_1140
View Structure
9
1795020-1795130
(-)
TPP
1793974-1794946 (-)
Marpi_1721
ABC transporter periplasmic binding protein; thiB subfamily
Marpi_1721
Single gene
DOOR ID:
3359518
Marpi_1721
View Structure
10
2134668-2134769
(+)
purine
2134933-2136274 (+)
Marpi_2029
Permease
Marpi_2029
Single gene
DOOR ID:
3359570
Marpi_2029
View Structure
Genome:
Marinitoga piezophila KA3
(
NC_016751.1
);
Phylum:
Thermotogae
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GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"589077-589253";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"587998-588967";i:10;s:1:"-";i:11;s:10:"Marpi_0585";i:12;s:36:"Aspartate-semialdehyde dehydrogenase";i:13;s:10:"Marpi_0585";i:14;s:6:"Operon";i:15;s:7:"1325777";i:16;s:87:"Marpi_0585;Marpi_0584;Marpi_0583;Marpi_0582;Marpi_0581;Marpi_0580;Marpi_0579;Marpi_0578";i:17;s:197:"isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"881709-881819";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"881874-882072";i:10;s:1:"+";i:11;s:10:"Marpi_0887";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Marpi_0887";i:14;s:6:"Operon";i:15;s:7:"1325832";i:16;s:54:"Marpi_0891;Marpi_0890;Marpi_0889;Marpi_0888;Marpi_0887";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"931042-931157";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"931277-932462";i:10;s:1:"+";i:11;s:10:"Marpi_0932";i:12;s:48:"GTP cyclohydrolase-2 (5) (GTP cyclohydrolase II)";i:13;s:10:"Marpi_0932";i:14;s:6:"Operon";i:15;s:7:"1325840";i:16;s:43:"Marpi_0935;Marpi_0934;Marpi_0933;Marpi_0932";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1008559-1008735";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1007621-1008506";i:10;s:1:"-";i:11;s:10:"Marpi_1005";i:12;s:65:"ABC-type Fe3+-hydroxamate transport system; periplasmic component";i:13;s:10:"Marpi_1005";i:14;s:6:"Operon";i:15;s:7:"1325855";i:16;s:43:"Marpi_1005;Marpi_1004;Marpi_1003;Marpi_1002";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1093939-1094117";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1094169-1095192";i:10;s:1:"+";i:11;s:10:"Marpi_1069";i:12;s:37:"Succinyl-CoA synthetase; beta subunit";i:13;s:10:"Marpi_1069";i:14;s:6:"Operon";i:15;s:7:"1325867";i:16;s:21:"Marpi_1070;Marpi_1069";i:17;s:37:"tricarboxylic acid cycle [GO:0006099]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1165922-1166044";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1166053-1167853";i:10;s:1:"+";i:11;s:10:"Marpi_1140";i:12;s:34:"Aldehyde:ferredoxin oxidoreductase";i:13;s:10:"Marpi_1140";i:14;s:6:"Operon";i:15;s:7:"1325882";i:16;s:21:"Marpi_1141;Marpi_1140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1795020-1795130";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1793974-1794946";i:10;s:1:"-";i:11;s:10:"Marpi_1721";i:12;s:59:"ABC transporter periplasmic binding protein; thiB subfamily";i:13;s:10:"Marpi_1721";i:14;s:11:"Single gene";i:15;s:7:"3359518";i:16;s:10:"Marpi_1721";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016751.1";i:2;s:26:"Marinitoga piezophila KA3 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"2134668-2134769";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2134933-2136274";i:10;s:1:"+";i:11;s:10:"Marpi_2029";i:12;s:8:"Permease";i:13;s:10:"Marpi_2029";i:14;s:11:"Single gene";i:15;s:7:"3359570";i:16;s:10:"Marpi_2029";i:17;s:0:"";i:18;s:15:"View Structure ";}}
