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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
84003-84098
(-)
TPP
83180-83954 (-)
fabG
3-ketoacyl-(Acyl-carrier-protein) reductase (00)
GU3_00400
Operon
DOOR ID:
954943
GU3_00395,
GU3_00400
(fabG)
View Structure
2
87981-88087
(+)
TPP
88166-89603 (+)
GU3_00425
Sodium transporter family protein
GU3_00425
Single gene
DOOR ID:
3357786
GU3_00425
View Structure
3
339529-339630
(-)
TPP
337499-339455 (-)
GU3_01685
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
GU3_01685
Operon
DOOR ID:
955001
GU3_01660
(thiH)
,
GU3_01665
(thiG)
,
GU3_01670,
GU3_01675,
GU3_01680,
GU3_01685
View Structure
4
534184-534286
(+)
TPP
535330-537628 (+)
GU3_02515
Putative monovalent cation/H+ antiporter subunit A
GU3_02515
Operon
DOOR ID:
955032
GU3_02515,
GU3_02520,
GU3_02525,
GU3_02530,
GU3_02535,
GU3_02540,
GU3_02545
View Structure
5
733957-734154
(+)
cobalamin
734187-736023 (+)
GU3_03465
Vitamin B12 transporter btuB
GU3_03465
Operon
DOOR ID:
955072
GU3_03465,
GU3_03470
View Structure
6
2341333-2341436
(+)
TPP
2341533-2343558 (+)
GU3_10775
TonB-dependent receptor
GU3_10775
Single gene
DOOR ID:
3358152
GU3_10775
View Structure
7
2404971-2405123
(-)
MOCO
2403294-2403795 (-)
GU3_11070
Ferredoxin-type protein NapF
GU3_11070
Operon
DOOR ID:
955395
GU3_11050,
GU3_11055,
GU3_11060,
GU3_11065,
GU3_11070
View Structure
8
2540644-2540817
(-)
lysine
2539022-2540525 (-)
GU3_11660
Na+/H+ antiporter
GU3_11660
Single gene
DOOR ID:
3358201
GU3_11660
View Structure
9
2601114-2601287
(+)
yybP-ykoY
2601310-2601874 (+)
GU3_11940
GU3_11940
Single gene
DOOR ID:
3358211
GU3_11940
View Structure
10
2605039-2605210
(+)
lysine
2605278-2606616 (+)
GU3_11955
Aspartokinase
GU3_11955
Single gene
DOOR ID:
3358214
GU3_11955
View Structure
11
3057519-3057606
(-)
c-di-GMP-I
3056559-3057405 (-)
GU3_14085
Putative outer membrane protein
GU3_14085
operon
DOOR ID:
955513
GU3_14050,
GU3_14055,
GU3_14060,
GU3_14065
(fliG)
,
GU3_14070
(fliF)
,
GU3_14075,
GU3_14080,
GU3_14085
View Structure
Genome:
Oceanimonas sp. GK1
(
NC_016745.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"84003-84098";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"83180-83954";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:48:"3-ketoacyl-(Acyl-carrier-protein) reductase (00)";i:13;s:9:"GU3_00400";i:14;s:6:"Operon";i:15;s:6:"954943";i:16;s:25:"GU3_00395;GU3_00400(fabG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. 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GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"534184-534286";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"535330-537628";i:10;s:1:"+";i:11;s:9:"GU3_02515";i:12;s:50:"Putative monovalent cation/H+ antiporter subunit A";i:13;s:9:"GU3_02515";i:14;s:6:"Operon";i:15;s:6:"955032";i:16;s:69:"GU3_02515;GU3_02520;GU3_02525;GU3_02530;GU3_02535;GU3_02540;GU3_02545";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"733957-734154";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"734187-736023";i:10;s:1:"+";i:11;s:9:"GU3_03465";i:12;s:28:"Vitamin B12 transporter btuB";i:13;s:9:"GU3_03465";i:14;s:6:"Operon";i:15;s:6:"955072";i:16;s:19:"GU3_03465;GU3_03470";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2341333-2341436";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2341533-2343558";i:10;s:1:"+";i:11;s:9:"GU3_10775";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"GU3_10775";i:14;s:11:"Single gene";i:15;s:7:"3358152";i:16;s:9:"GU3_10775";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2404971-2405123";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2403294-2403795";i:10;s:1:"-";i:11;s:9:"GU3_11070";i:12;s:28:"Ferredoxin-type protein NapF";i:13;s:9:"GU3_11070";i:14;s:6:"Operon";i:15;s:6:"955395";i:16;s:49:"GU3_11050;GU3_11055;GU3_11060;GU3_11065;GU3_11070";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2540644-2540817";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2539022-2540525";i:10;s:1:"-";i:11;s:9:"GU3_11660";i:12;s:17:"Na+/H+ antiporter";i:13;s:9:"GU3_11660";i:14;s:11:"Single gene";i:15;s:7:"3358201";i:16;s:9:"GU3_11660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2601114-2601287";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2601310-2601874";i:10;s:1:"+";i:11;s:9:"GU3_11940";i:12;s:0:"";i:13;s:9:"GU3_11940";i:14;s:11:"Single gene";i:15;s:7:"3358211";i:16;s:9:"GU3_11940";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2605039-2605210";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2605278-2606616";i:10;s:1:"+";i:11;s:9:"GU3_11955";i:12;s:14:"Aspartokinase ";i:13;s:9:"GU3_11955";i:14;s:11:"Single gene";i:15;s:7:"3358214";i:16;s:9:"GU3_11955";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016745.1";i:2;s:20:"Oceanimonas sp. GK1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3057519-3057606";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3056559-3057405";i:10;s:1:"-";i:11;s:9:"GU3_14085";i:12;s:31:"Putative outer membrane protein";i:13;s:9:"GU3_14085";i:14;s:6:"operon";i:15;s:6:"955513";i:16;s:91:"GU3_14050;GU3_14055;GU3_14060;GU3_14065(fliG);GU3_14070(fliF);GU3_14075;GU3_14080;GU3_14085";i:17;s:0:"";i:18;s:15:"View Structure ";}}
