Genome: Paenibacillus terrae HPL-003 (NC_016641.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 70758-70852 (-)glycine69180-70599 (-)HPL003_00280

HPL003_00280Single gene

DOOR ID: 3351693		HPL003_00280 View Structure
2 70870-70946 (-)glycine69180-70599 (-)HPL003_00280

HPL003_00280Single gene

DOOR ID: 3351693		HPL003_00280 View Structure
3 95636-95739 (+)TPP95873-96563 (+)HPL003_00375

Aminopyrimidine aminohydrolase 		HPL003_00375Operon

DOOR ID: 953320		HPL003_00375,
HPL003_00380,
HPL003_00385,
HPL003_00390 (thiE)		 View Structure
4 270905-271054 (-)ydaO-yuaA269125-270466 (-)HPL003_01305

V-type sodium ATP synthase subunit J (Na(+)-translocating ATPase subunit J)		HPL003_01305Operon

DOOR ID: 953359		HPL003_01300,
HPL003_01305		 View Structure
5 307841-307980 (-)SAM306680-307703 (-)HPL003_01510

Methionine import ATP-binding protein MetN 		HPL003_01510Operon

DOOR ID: 953366		HPL003_01500,
HPL003_01505,
HPL003_01510		 View Structure
6 560734-560935 (+)lysine561069-562536 (+)HPL003_02815

Lysine-specific permease		HPL003_02815Single gene

DOOR ID: 3351907		HPL003_02815 View Structure
7 743882-744110 (-)glmS741830-743663 (-)HPL003_03645

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		HPL003_03645Single gene

DOOR ID: 3351973		HPL003_03645 View Structure
8 1018803-1018884 (-)ZMP-ZTP1017929-1018517 (-)HPL003_04820

HPL003_04820Single gene

DOOR ID: 3352040		HPL003_04820 View Structure
9 1102022-1102209 (-)cobalamin1099870-1101709 (-)HPL003_05240

Cobalt-precorrin-3B C(17)-methyltransferase (Cobalt-precorrin-3 methyltransferase)		HPL003_05240Single gene

DOOR ID: 3352080		HPL003_05240 View Structure
10 1130670-1130866 (+)cobalamin1131025-1133344 (+)HPL003_05390

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		HPL003_05390Single gene

DOOR ID: 3352093		HPL003_05390 View Structure
11 1205427-1205526 (-)purine1204173-1205358 (-)HPL003_05745

Hypoxanthine efflux transporter		HPL003_05745Operon

DOOR ID: 953526		HPL003_05735,
HPL003_05740,
HPL003_05745		 View Structure
12 1408063-1408264 (-)cobalamin1407923-1408040 (-)HPL003_06565

HPL003_06565Operon

DOOR ID: 953559		HPL003_06540,
HPL003_06545,
HPL003_06550,
HPL003_06555,
HPL003_06560,
HPL003_06565		 View Structure
13 1411783-1411886 (-)purine1411007-1411625 (-)HPL003_06580

Xanthine phosphoribosyltransferase (XPRTase) (2)		HPL003_06580Operon

DOOR ID: 953560		HPL003_06575,
HPL003_06580		 View Structure
14 1628893-1629174 (+)ydaO-yuaA1629443-1630592 (+)HPL003_07615

3D domain protein		HPL003_07615Single gene

DOOR ID: 3352299		HPL003_07615 View Structure
15 1702809-1702946 (-)ydaO-yuaA1702302-1702803 (-)HPL003_07965

Nlp/p60 family protein		HPL003_07965Single gene

DOOR ID: 3352323		HPL003_07965 View Structure
16 2086064-2086177 (-)glycine2085165-2085855 (-)HPL003_09610

L-serine dehydratase subunit beta		HPL003_09610Operon

DOOR ID: 953678		HPL003_09605,
HPL003_09610		 View Structure
17 2098453-2098534 (-)c-di-GMP-I2097623-2098439 (-)HPL003_09665

Transglutaminase		HPL003_09665single gene

DOOR ID: 3352483		HPL003_09665 View Structure
18 2098576-2098656 (-)c-di-GMP-I2097623-2098439 (-)HPL003_09665

Transglutaminase		HPL003_09665single gene

DOOR ID: 3352483		HPL003_09665 View Structure
19 2125106-2125215 (-)TPP2123859-2124906 (-)HPL003_09780

Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein		HPL003_09780Single gene

DOOR ID: 3352498		HPL003_09780 View Structure
20 2479588-2479700 (+)TPP2479880-2481668 (+)HPL003_11495

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		HPL003_11495Single gene

DOOR ID: 3352669		HPL003_11495 View Structure
21 2540598-2540699 (+)purine2540845-2541331 (+)HPL003_11755

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		HPL003_11755Operon

DOOR ID: 953761		HPL003_11755,
HPL003_11760,
HPL003_11765		 View Structure
22 2652593-2652677 (-)ZMP-ZTP2651612-2652479 (-)HPL003_12320

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		HPL003_12320Operon

DOOR ID: 953784		HPL003_12315,
HPL003_12320		 View Structure
23 2681496-2681607 (+)TPP2681908-2682505 (+)HPL003_12465

Membrane protein		HPL003_12465Operon

DOOR ID: 953790		HPL003_12465,
HPL003_12470,
HPL003_12475		 View Structure
24 2943305-2943348 (-)PreQ12942487-2943171 (-)HPL003_13620

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		HPL003_13620Operon

DOOR ID: 953833		HPL003_13610,
HPL003_13615,
HPL003_13620		 View Structure
25 3006386-3006466 (+)c-di-GMP-I3006479-3008081 (+)HPL003_13935

Glycosyl hydrolase family 26		HPL003_13935operon

DOOR ID: 953844		HPL003_13935,
HPL003_13940		 View Structure
26 3099562-3099706 (-)FMN3098442-3099390 (-)HPL003_14410

Permease of the drug/metabolite transporter (DMT) superfamily protein		HPL003_14410Single gene

DOOR ID: 3352890		HPL003_14410 View Structure
27 3121339-3121514 (+)ydaO-yuaA3121629-3122025 (+)HPL003_14535

HPL003_14535Operon

DOOR ID: 953872		HPL003_14535,
HPL003_14540		 View Structure
28 3179838-3180032 (+)cobalamin3180232-3181237 (+)HPL003_14835

Fe3+-hydroxamate ABC transporter periplasmic protein		HPL003_14835Operon

DOOR ID: 953882		HPL003_14835,
HPL003_14840,
HPL003_14845,
HPL003_14850,
HPL003_14855,
HPL003_14860,
HPL003_14865		 View Structure
29 3196177-3196222 (+)PreQ13196225-3196924 (+)HPL003_14895

Probable queuosine precursor transporter (Q precursor transporter)		HPL003_14895Operon

DOOR ID: 953883		HPL003_14895,
HPL003_14900,
HPL003_14905,
HPL003_14910,
HPL003_14915,
HPL003_14920,
HPL003_14925,
HPL003_14930,
HPL003_14935,
HPL003_14940,
HPL003_14945,
HPL003_14950		 View Structure
30 3359499-3359624 (+)SAM3359745-3360663 (+)HPL003_15655

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		HPL003_15655Single gene

DOOR ID: 3352991		HPL003_15655 View Structure
31 4343837-4343945 (+)TPP4344226-4344847 (+)HPL003_20225

Transcriptional regulator TenI		HPL003_20225Operon

DOOR ID: 954087		HPL003_20225,
HPL003_20230,
HPL003_20235,
HPL003_20240 (thiG),
HPL003_20245		 View Structure
32 4365885-4365974 (+)c-di-GMP-I4366105-4367461 (+)HPL003_20330

Amino acid adenylation domain-containing protein		HPL003_20330operon

DOOR ID: 954090		HPL003_20330,
HPL003_20335		 View Structure
33 4393727-4393901 (+)ydaO-yuaA4393908-4394577 (+)HPL003_20430

3d domain protein		HPL003_20430Single gene

DOOR ID: 3353386		HPL003_20430 View Structure
34 4653325-4653410 (-)c-di-GMP-I4653110-4653287 (-)HPL003_21590

Uncharacterized protein		HPL003_21590single gene

DOOR ID: 3353491		HPL003_21590 View Structure
35 5153163-5153336 (-)FMN5152162-5152828 (-)HPL003_23675

Riboflavin synthase alpha chain		HPL003_23675Operon

DOOR ID: 954221		HPL003_23665,
HPL003_23670,
HPL003_23675		 View Structure
36 5978607-5978708 (+)glycine5978787-5979888 (+)HPL003_27550

Aminomethyltransferase (0) (Glycine cleavage system T protein)		HPL003_27550Single gene

DOOR ID: 3353973		HPL003_27550 View Structure