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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
325103-325290
(-)
cobalamin
324130-325048 (-)
SpiGrapes_0305
ABC-type Fe3+-hydroxamate transport system; periplasmic component
SpiGrapes_0305
Operon
DOOR ID:
1208667
SpiGrapes_0305,
SpiGrapes_0304,
SpiGrapes_0303
View Structure
2
492698-492814
(+)
glycine
493053-493125 (+)
SpiGrapes_0449
SpiGrapes_0449
Single gene
DOOR ID:
3351042
SpiGrapes_0449
View Structure
3
1490254-1490433
(+)
cobalamin
1490519-1492427 (+)
SpiGrapes_1379
Outer membrane cobalamin receptor protein
SpiGrapes_1379
Single gene
DOOR ID:
3350498
SpiGrapes_1379
View Structure
4
1930003-1930096
(-)
Nico
1928939-1929596 (-)
SpiGrapes_1768
SpiGrapes_1768
Operon
DOOR ID:
1208982
SpiGrapes_1767,
SpiGrapes_1768
View Structure
5
2110210-2110385
(-)
cobalamin
2108062-2110144 (-)
SpiGrapes_1913
Anaerobic ribonucleoside-triphosphate reductase
SpiGrapes_1913
Operon
DOOR ID:
1209010
SpiGrapes_1912,
SpiGrapes_1913
View Structure
6
2239204-2239294
(-)
Nico
2238208-2239120 (-)
SpiGrapes_2038
Cation diffusion facilitator family transporter
SpiGrapes_2038
Operon
DOOR ID:
1209037
SpiGrapes_2036,
SpiGrapes_2037,
SpiGrapes_2038
View Structure
7
2504743-2504807
(-)
fluoride
2503438-2504689 (-)
SpiGrapes_2286
NhaP-type Na+(K+)/H+ antiporter
SpiGrapes_2286
Single gene
DOOR ID:
3350742
SpiGrapes_2286
View Structure
8
3329345-3329437
(-)
TPP
3328256-3329300 (-)
SpiGrapes_3054
ABC transporter periplasmic binding protein; thiB subfamily
SpiGrapes_3054
Operon
DOOR ID:
1209235
SpiGrapes_3049,
SpiGrapes_3050,
SpiGrapes_3051,
SpiGrapes_3052,
SpiGrapes_3053,
SpiGrapes_3054
View Structure
Genome:
Sphaerochaeta pleomorpha str. Grapes
(
NC_016633.1
);
Phylum:
Spirochaetia
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