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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
31977-32072
(+)
THF
33000-35589 (+)
HMPREF0389_01171
ATP-dependent RNA helicase
HMPREF0389_01171
Single gene
DOOR ID:
3349403
HMPREF0389_01171
View Structure
2
557071-557202
(-)
yybP-ykoY
556297-556993 (-)
HMPREF0389_00140
Membrane protein
HMPREF0389_00140
Single gene
DOOR ID:
3349473
HMPREF0389_00140
View Structure
3
773756-773856
(-)
SAM
772304-773483 (-)
HMPREF0389_01626
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
HMPREF0389_01626
Single gene
DOOR ID:
3349511
HMPREF0389_01626
View Structure
4
859940-860021
(-)
c-di-GMP-I
857980-859618 (-)
HMPREF0389_01696
Uncharacterized protein
HMPREF0389_01696
single gene
DOOR ID:
3349526
HMPREF0389_01696
View Structure
5
1505312-1505426
(+)
FMN
1505625-1506720 (+)
HMPREF0389_00879
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
HMPREF0389_00879
Operon
DOOR ID:
952328
HMPREF0389_00879,
HMPREF0389_00880
View Structure
6
1629074-1629192
(-)
FMN
1628170-1628785 (-)
HMPREF0389_00997
Riboflavin transporter
HMPREF0389_00997
Single gene
DOOR ID:
3349697
HMPREF0389_00997
View Structure
7
1704945-1705044
(-)
TPP
1704097-1704628 (-)
HMPREF0389_01062
Proton-coupled thiamine transporter YuaJ
HMPREF0389_01062
Single gene
DOOR ID:
3349711
HMPREF0389_01062
View Structure
8
1888497-1888651
(+)
glmS
1888888-1890715 (+)
HMPREF0389_01229
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
HMPREF0389_01229
Single gene
DOOR ID:
3349752
HMPREF0389_01229
View Structure
Genome:
Filifactor alocis ATCC 35896
(
NC_016630.1
);
Phylum:
Firmicutes
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