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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
163604-163799
(+)
cobalamin
163914-164832 (+)
Desaf_0152
Sirohydrochlorin cobaltochelatase
Desaf_0152
Operon
DOOR ID:
1207873
Desaf_0154,
Desaf_0153,
Desaf_0152
View Structure
2
576199-576298
(+)
TPP
576394-577636 (+)
Desaf_0518
Hydroxymethylpyrimidine transporter CytX
Desaf_0518
Single gene
DOOR ID:
3348088
Desaf_0518
View Structure
3
960108-960171
(+)
ykkC-III
960189-960516 (+)
Desaf_0881
Desaf_0881
single gene
DOOR ID:
3348239
Desaf_0881
View Structure
4
1006160-1006248
(+)
c-di-GMP-I
1006311-1006707 (+)
Desaf_0923
Fibronectin type III domain protein
Desaf_0923
single gene
DOOR ID:
3348262
Desaf_0923
View Structure
5
1095889-1095992
(-)
TPP
1094989-1095784 (-)
Desaf_0994
Thiamine thiazole synthase
Desaf_0994
Operon
DOOR ID:
1208026
Desaf_0994,
Desaf_0993
View Structure
6
3746539-3746690
(-)
FMN
3745744-3746413 (-)
Desaf_3398
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Desaf_3398
Single gene
DOOR ID:
3349199
Desaf_3398
View Structure
7
3960656-3960716
(+)
fluoride
3960801-3962073 (+)
Desaf_3596
Major facilitator superfamily MFS_1
Desaf_3596
Single gene
DOOR ID:
3349255
Desaf_3596
View Structure
Genome:
Desulfovibrio africanus str. Walvis Bay
(
NC_016629.1
);
Phylum:
delta/epsilon subdivisions
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