Genome: Clostridium clariflavum DSM 19732 (NC_016627.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 142540-142641 (+)SAM142718-143912 (+)Clocl_0130

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Clocl_0130Single gene

DOOR ID: 3345593		Clocl_0130 View Structure
2 427973-428216 (-)ydaO-yuaA427307-427970 (-)Clocl_0394

Cell wall-associated hydrolase; invasion-associated protein		Clocl_0394Single gene

DOOR ID: 3345708		Clocl_0394 View Structure
3 675659-675802 (+)ydaO-yuaA675802-676882 (+)Clocl_0586

Putative peptidoglycan-binding domain-containing protein		Clocl_0586Single gene

DOOR ID: 3345786		Clocl_0586 View Structure
4 829615-829798 (+)cobalamin829949-832292 (+)Clocl_0720

Ribonucleoside-triphosphate reductase class III catalytic subunit 		Clocl_0720Operon

DOOR ID: 1207209		Clocl_0720,
Clocl_0721		 View Structure
5 1212931-1213036 (-)TPP1212546-1212834 (-)Clocl_1043

Clocl_1043Operon

DOOR ID: 1207262		Clocl_1040,
Clocl_1041,
Clocl_1042,
Clocl_1043		 View Structure
6 1317941-1318096 (+)FMN1318277-1319351 (+)Clocl_1124

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Clocl_1124Operon

DOOR ID: 1207276		Clocl_1124,
Clocl_1125,
Clocl_1126,
Clocl_1127		 View Structure
7 1652143-1652239 (-)c-di-GMP-I1651228-1651972 (+)Clocl_1436

DNA repair protein RecO (Recombination protein O)		Clocl_1436single gene

DOOR ID: 3346148		Clocl_1436 View Structure
8 1675042-1675184 (+)glycine1675562-1677431 (+)Clocl_1455

Spore germination protein; GerA family		Clocl_1455Operon

DOOR ID: 1207344		Clocl_1455,
Clocl_1456,
Clocl_1457,
Clocl_1458,
Clocl_1459,
Clocl_1460		 View Structure
9 2058740-2058872 (-)ydaO-yuaA2057675-2058548 (-)Clocl_1796

4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) 		Clocl_1796Single gene

DOOR ID: 3346270		Clocl_1796 View Structure
10 2570443-2570537 (+)c-di-GMP-I2570705-2571356 (-)Clocl_2239

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		Clocl_2239operon

DOOR ID: 1207494		Clocl_2239,
Clocl_2240		 View Structure
11 2751271-2751449 (+)lysine2751696-2752578 (+)Clocl_2406

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Clocl_2406Operon

DOOR ID: 1207525		Clocl_2406,
Clocl_2407		 View Structure
12 2934423-2934524 (-)TPP2934049-2934250 (-)Clocl_2547

Thiamine biosynthesis protein ThiS		Clocl_2547Operon

DOOR ID: 1207549		Clocl_2542,
Clocl_2543,
Clocl_2544,
Clocl_2545,
Clocl_2546,
Clocl_2547		 View Structure
13 3427379-3427437 (-)fluoride3426151-3427324 (-)Clocl_2942

NhaP-type Na+(K+)/H+ antiporter		Clocl_2942Operon

DOOR ID: 1207623		Clocl_2941,
Clocl_2942		 View Structure
14 3475310-3475491 (-)glmS3473128-3474952 (-)Clocl_2979

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Clocl_2979Single gene

DOOR ID: 3346754		Clocl_2979 View Structure
15 3484446-3484539 (+)c-di-GMP-I3484654-3484813 (-)Clocl_2987

Uncharacterized protein		Clocl_2987operon

DOOR ID: 1207632		Clocl_2987,
Clocl_2988		 View Structure
16 3644951-3645032 (+)ZMP-ZTP3645104-3647339 (+)Clocl_3110

Formate acetyltransferase 1		Clocl_3110Operon

DOOR ID: 1207648		Clocl_3110,
Clocl_3111		 View Structure
17 3859175-3859259 (+)c-di-GMP-I3859448-3860291 (+)Clocl_3302

Transglutaminase-like enzyme; predicted cysteine protease		Clocl_3302single gene

DOOR ID: 3346915		Clocl_3302 View Structure
18 3859347-3859432 (+)c-di-GMP-I3859448-3860291 (+)Clocl_3302

Transglutaminase-like enzyme; predicted cysteine protease		Clocl_3302single gene

DOOR ID: 3346915		Clocl_3302 View Structure
19 4160474-4160572 (-)TPP4159405-4160242 (-)Clocl_3526

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Clocl_3526Single gene

DOOR ID: 3347019		Clocl_3526 View Structure
20 4181789-4181878 (-)c-di-GMP-I4181270-4181597 (+)Clocl_3545

Helix-turn-helix protein		Clocl_3545single gene

DOOR ID: 3347027		Clocl_3545 View Structure
21 4200978-4201064 (-)c-di-GMP-I4200076-4200817 (-)Clocl_3569

Response regulator of the LytR/AlgR family		Clocl_3569operon

DOOR ID: 1207724		Clocl_3568,
Clocl_3569		 View Structure
22 4227886-4228084 (-)cobalamin4227015-4227756 (-)Clocl_3600

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Clocl_3600Operon

DOOR ID: 1207728		Clocl_3597,
Clocl_3598,
Clocl_3599,
Clocl_3600		 View Structure
23 4760939-4761117 (-)cobalamin4759849-4760812 (-)Clocl_4123

ABC-type Fe3+-hydroxamate transport system; periplasmic component		Clocl_4123Operon

DOOR ID: 1207825		Clocl_4121,
Clocl_4122,
Clocl_4123		 View Structure