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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
306038-306137
(-)
TPP
304658-304868 (-)
thiS
Thiamine biosynthesis protein ThiS
AZOLI_0319
Operon
DOOR ID:
950067
AZOLI_0319
(thiS)
,
AZOLI_0320
(thiO)
View Structure
2
367728-367861
(+)
TPP
367980-369705 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AZOLI_0384
Single gene
DOOR ID:
3343497
AZOLI_0384
(thiC)
View Structure
3
1190580-1190695
(+)
glycine
1190864-1191977 (+)
gcvT
Glycine cleavage system T-protein (Aminomethyltransferase) (0)
AZOLI_1252
Operon
DOOR ID:
950240
AZOLI_1251,
AZOLI_1252
(gcvT)
,
AZOLI_1253
(gcvH)
,
AZOLI_1254
(gcvPA)
,
AZOLI_1255
(gcvPB)
View Structure
4
1284140-1284246
(-)
TPP
1283348-1284113 (-)
AZOLI_1358
ABC transporter ATP-binding component
AZOLI_1358
Operon
DOOR ID:
950260
AZOLI_1356,
AZOLI_1357,
AZOLI_1358
View Structure
5
1388344-1388397
(-)
mini-ykkC
1388001-1388319 (-)
sugE
AZOLI_1465
Single gene
DOOR ID:
3343730
AZOLI_1465
(sugE)
View Structure
6
1534549-1534628
(+)
sam-alpha
1534708-1535917 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
AZOLI_1613
Operon
DOOR ID:
950314
AZOLI_1613
(metZ)
,
AZOLI_1614
View Structure
Genome:
Azospirillum lipoferum 4B
(
NC_016622.1
);
Phylum:
Alphaproteobacteria
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