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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
12393-12497
(+)
glycine
12762-13377 (+)
Dsui_0014
Putative membrane protein
Dsui_0014
Single gene
DOOR ID:
3339977
Dsui_0014
View Structure
2
49124-49320
(-)
cobalamin
48308-49079 (-)
Dsui_0051
Cob(II)yrinic acid a;c-diamide reductase
Dsui_0051
Single gene
DOOR ID:
3340000
Dsui_0051
View Structure
3
424243-424331
(+)
TPP
424449-426366 (+)
Dsui_0422
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dsui_0422
Single gene
DOOR ID:
3340080
Dsui_0422
View Structure
4
533629-533840
(+)
cobalamin
533971-535936 (+)
Dsui_0529
Outer membrane cobalamin receptor protein
Dsui_0529
Operon
DOOR ID:
1206433
Dsui_0532,
Dsui_0531,
Dsui_0530,
Dsui_0529
View Structure
5
635753-635842
(-)
SAH
634266-635667 (-)
Dsui_0642
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Dsui_0642
Operon
DOOR ID:
1206460
Dsui_0642,
Dsui_0641,
Dsui_0640
View Structure
6
715875-716030
(-)
cobalamin
715595-715766 (-)
Dsui_0722
Dsui_0722
Operon
DOOR ID:
1206477
Dsui_0722,
Dsui_0721
View Structure
7
783303-783384
(+)
SAH
783471-787152 (+)
Dsui_0779
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Dsui_0779
Single gene
DOOR ID:
3340171
Dsui_0779
View Structure
8
1787251-1787295
(+)
mini-ykkC
1787314-1787671 (+)
Dsui_1699
Dsui_1699
Single gene
DOOR ID:
3340446
Dsui_1699
View Structure
9
2029610-2029864
(-)
cobalamin
2027126-2029406 (-)
Dsui_1922
Outer membrane receptor for ferrienterochelin and colicins
Dsui_1922
Operon
DOOR ID:
1206739
Dsui_1919,
Dsui_1920,
Dsui_1921,
Dsui_1922
View Structure
10
2034172-2034423
(-)
cobalamin
2031196-2034043 (-)
Dsui_1924
Ribonucleoside-diphosphate reductase
Dsui_1924
Operon
DOOR ID:
1206740
Dsui_1923,
Dsui_1924
View Structure
11
2490539-2490634
(+)
c-di-GMP-I
2490722-2491634 (+)
Dsui_2339
Putative domain HDIG-containing protein
Dsui_2339
single gene
DOOR ID:
3340673
Dsui_2339
View Structure
12
2889198-2889307
(+)
glycine
2889523-2890615 (+)
Dsui_2735
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Dsui_2735
Operon
DOOR ID:
1206911
Dsui_2735,
Dsui_2736
View Structure
13
3163997-3164214
(-)
cobalamin
3162960-3163830 (-)
Dsui_2954
Acyl-CoA hydrolase
Dsui_2954
Single gene
DOOR ID:
3340874
Dsui_2954
View Structure
14
3164284-3164498
(+)
cobalamin
3164633-3165311 (+)
Dsui_2955
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Dsui_2955
Operon
DOOR ID:
1206956
Dsui_2955,
Dsui_2956,
Dsui_2957,
Dsui_2958,
Dsui_2959,
Dsui_2960,
Dsui_2961,
Dsui_2962,
Dsui_2963,
Dsui_2964,
Dsui_2965,
Dsui_2966,
Dsui_2967,
Dsui_2968,
Dsui_2969
View Structure
Genome:
Dechlorosoma suillum PS
(
NC_016616.1
);
Phylum:
Betaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"12393-12497";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"12762-13377";i:10;s:1:"+";i:11;s:9:"Dsui_0014";i:12;s:25:"Putative membrane protein";i:13;s:9:"Dsui_0014";i:14;s:11:"Single gene";i:15;s:7:"3339977";i:16;s:9:"Dsui_0014";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"49124-49320";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"48308-49079";i:10;s:1:"-";i:11;s:9:"Dsui_0051";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:9:"Dsui_0051";i:14;s:11:"Single gene";i:15;s:7:"3340000";i:16;s:9:"Dsui_0051";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"424243-424331";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"424449-426366";i:10;s:1:"+";i:11;s:9:"Dsui_0422";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Dsui_0422";i:14;s:11:"Single gene";i:15;s:7:"3340080";i:16;s:9:"Dsui_0422";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"533629-533840";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"533971-535936";i:10;s:1:"+";i:11;s:9:"Dsui_0529";i:12;s:41:"Outer membrane cobalamin receptor protein";i:13;s:9:"Dsui_0529";i:14;s:6:"Operon";i:15;s:7:"1206433";i:16;s:39:"Dsui_0532;Dsui_0531;Dsui_0530;Dsui_0529";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"635753-635842";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"634266-635667";i:10;s:1:"-";i:11;s:9:"Dsui_0642";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Dsui_0642";i:14;s:6:"Operon";i:15;s:7:"1206460";i:16;s:29:"Dsui_0642;Dsui_0641;Dsui_0640";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"715875-716030";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"715595-715766";i:10;s:1:"-";i:11;s:9:"Dsui_0722";i:12;s:0:"";i:13;s:9:"Dsui_0722";i:14;s:6:"Operon";i:15;s:7:"1206477";i:16;s:19:"Dsui_0722;Dsui_0721";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"783303-783384";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"783471-787152";i:10;s:1:"+";i:11;s:9:"Dsui_0779";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Dsui_0779";i:14;s:11:"Single gene";i:15;s:7:"3340171";i:16;s:9:"Dsui_0779";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1787251-1787295";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1787314-1787671";i:10;s:1:"+";i:11;s:9:"Dsui_1699";i:12;s:0:"";i:13;s:9:"Dsui_1699";i:14;s:11:"Single gene";i:15;s:7:"3340446";i:16;s:9:"Dsui_1699";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2029610-2029864";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2027126-2029406";i:10;s:1:"-";i:11;s:9:"Dsui_1922";i:12;s:58:"Outer membrane receptor for ferrienterochelin and colicins";i:13;s:9:"Dsui_1922";i:14;s:6:"Operon";i:15;s:7:"1206739";i:16;s:39:"Dsui_1919;Dsui_1920;Dsui_1921;Dsui_1922";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2034172-2034423";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2031196-2034043";i:10;s:1:"-";i:11;s:9:"Dsui_1924";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Dsui_1924";i:14;s:6:"Operon";i:15;s:7:"1206740";i:16;s:19:"Dsui_1923;Dsui_1924";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2490539-2490634";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2490722-2491634";i:10;s:1:"+";i:11;s:9:"Dsui_2339";i:12;s:39:"Putative domain HDIG-containing protein";i:13;s:9:"Dsui_2339";i:14;s:11:"single gene";i:15;s:7:"3340673";i:16;s:9:"Dsui_2339";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2889198-2889307";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2889523-2890615";i:10;s:1:"+";i:11;s:9:"Dsui_2735";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Dsui_2735";i:14;s:6:"Operon";i:15;s:7:"1206911";i:16;s:19:"Dsui_2735;Dsui_2736";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3163997-3164214";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3162960-3163830";i:10;s:1:"-";i:11;s:9:"Dsui_2954";i:12;s:18:"Acyl-CoA hydrolase";i:13;s:9:"Dsui_2954";i:14;s:11:"Single gene";i:15;s:7:"3340874";i:16;s:9:"Dsui_2954";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016616.1";i:2;s:24:"Dechlorosoma suillum PS ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3164284-3164498";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3164633-3165311";i:10;s:1:"+";i:11;s:9:"Dsui_2955";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:9:"Dsui_2955";i:14;s:6:"Operon";i:15;s:7:"1206956";i:16;s:149:"Dsui_2955;Dsui_2956;Dsui_2957;Dsui_2958;Dsui_2959;Dsui_2960;Dsui_2961;Dsui_2962;Dsui_2963;Dsui_2964;Dsui_2965;Dsui_2966;Dsui_2967;Dsui_2968;Dsui_2969";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}}