About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
82942-83049
(-)
TPP
81985-82843 (-)
VEJY3_16211
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
VEJY3_16211
Operon
DOOR ID:
948208
VEJY3_16181
(thiE)
,
VEJY3_16186,
VEJY3_16191,
VEJY3_16196,
VEJY3_16201,
VEJY3_16206,
VEJY3_16211
View Structure
2
342962-343061
(-)
purine
341858-342872 (-)
VEJY3_17341
Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)
VEJY3_17341
Operon
DOOR ID:
948255
VEJY3_17336,
VEJY3_17341
View Structure
3
355916-356056
(-)
FMN
355144-355801 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
VEJY3_17426
Operon
DOOR ID:
948260
VEJY3_17416,
VEJY3_17421,
VEJY3_17426
(ribB)
View Structure
4
1114232-1114393
(-)
yybP-ykoY
1112713-1113682 (-)
VEJY3_20751
Inner membrane protein YrbG
VEJY3_20751
Operon
DOOR ID:
948401
VEJY3_20716,
VEJY3_20721,
VEJY3_20726,
VEJY3_20731,
VEJY3_20736,
VEJY3_20741,
VEJY3_20746,
VEJY3_20751
View Structure
5
1866513-1866597
(-)
c-di-GMP-I
1864670-1866242 (-)
VEJY3_24001
Levansucrase
VEJY3_24001
operon
DOOR ID:
948534
VEJY3_23996,
VEJY3_24001
View Structure
Genome:
Vibrio sp. EJY3 chromosome II
(
NC_016614.1
);
Phylum:
Gammaproteobacteria
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016614.1";i:2;s:29:"Vibrio sp. EJY3 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"82942-83049";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"81985-82843";i:10;s:1:"-";i:11;s:11:"VEJY3_16211";i:12;s:85:"Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase ";i:13;s:11:"VEJY3_16211";i:14;s:6:"Operon";i:15;s:6:"948208";i:16;s:89:"VEJY3_16181(thiE);VEJY3_16186;VEJY3_16191;VEJY3_16196;VEJY3_16201;VEJY3_16206;VEJY3_16211";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016614.1";i:2;s:29:"Vibrio sp. EJY3 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"342962-343061";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"341858-342872";i:10;s:1:"-";i:11;s:11:"VEJY3_17341";i:12;s:55:"Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)";i:13;s:11:"VEJY3_17341";i:14;s:6:"Operon";i:15;s:6:"948255";i:16;s:23:"VEJY3_17336;VEJY3_17341";i:17;s:116:"adenine catabolic process [GO:0006146]; hypoxanthine salvage [GO:0043103]; nucleotide metabolic process [GO:0009117]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016614.1";i:2;s:29:"Vibrio sp. EJY3 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"355916-356056";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"355144-355801";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"VEJY3_17426";i:14;s:6:"Operon";i:15;s:6:"948260";i:16;s:41:"VEJY3_17416;VEJY3_17421;VEJY3_17426(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016614.1";i:2;s:29:"Vibrio sp. EJY3 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1114232-1114393";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1112713-1113682";i:10;s:1:"-";i:11;s:11:"VEJY3_20751";i:12;s:27:"Inner membrane protein YrbG";i:13;s:11:"VEJY3_20751";i:14;s:6:"Operon";i:15;s:6:"948401";i:16;s:95:"VEJY3_20716;VEJY3_20721;VEJY3_20726;VEJY3_20731;VEJY3_20736;VEJY3_20741;VEJY3_20746;VEJY3_20751";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016614.1";i:2;s:29:"Vibrio sp. EJY3 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1866513-1866597";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1864670-1866242";i:10;s:1:"-";i:11;s:11:"VEJY3_24001";i:12;s:12:"Levansucrase";i:13;s:11:"VEJY3_24001";i:14;s:6:"operon";i:15;s:6:"948534";i:16;s:23:"VEJY3_23996;VEJY3_24001";i:17;s:37:"carbohydrate utilization [GO:0009758]";i:18;s:15:"View Structure ";}}