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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
23387-23501
(+)
yybP-ykoY
23594-24149 (+)
VEJY3_00105
VEJY3_00105
Single gene
DOOR ID:
3337958
VEJY3_00105
View Structure
2
334173-334321
(+)
TPP
334392-335385 (+)
tbpA
Thiamine transporter substrate binding subunit
VEJY3_01555
Operon
DOOR ID:
1323405
VEJY3_01565,
VEJY3_01560
(thiP)
,
VEJY3_01555
(tbpA)
View Structure
3
1089295-1089383
(-)
c-di-GMP-I
1088587-1089178 (-)
VEJY3_04780
Uncharacterized protein
VEJY3_04780
single gene
DOOR ID:
3338335
VEJY3_04780
View Structure
4
1246418-1246598
(+)
lysine
1246707-1248309 (+)
VEJY3_05540
VEJY3_05540
Single gene
DOOR ID:
3338392
VEJY3_05540
View Structure
5
1821254-1821354
(+)
glycine
1821469-1822843 (+)
VEJY3_08150
Sodium/alanine symporter
VEJY3_08150
Single gene
DOOR ID:
3338626
VEJY3_08150
View Structure
6
2424078-2424215
(-)
MOCO
2422486-2422999 (-)
VEJY3_10885
Molybdenum cofactor biosynthesis protein B
VEJY3_10885
Operon
DOOR ID:
1323755
VEJY3_10870,
VEJY3_10875
(moaD)
,
VEJY3_10880
(moaC)
,
VEJY3_10885
View Structure
7
3108748-3108926
(+)
lysine
3109025-3110378 (+)
VEJY3_13915
Aspartokinase
VEJY3_13915
Single gene
DOOR ID:
3339118
VEJY3_13915
View Structure
8
3337369-3337573
(-)
cobalamin
3335475-3337311 (-)
VEJY3_14850
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VEJY3_14850
Single gene
DOOR ID:
3339210
VEJY3_14850
View Structure
9
3423070-3423168
(-)
TPP
3420978-3422919 (-)
VEJY3_15250
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VEJY3_15250
Operon
DOOR ID:
1323918
VEJY3_15225
(thiH)
,
VEJY3_15230
(thiG)
,
VEJY3_15235,
VEJY3_15240,
VEJY3_15245
(thiE)
,
VEJY3_15250
View Structure
Genome:
Vibrio sp. EJY3 chromosome I
(
NC_016613.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"23387-23501";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:11:"23594-24149";i:10;s:1:"+";i:11;s:11:"VEJY3_00105";i:12;s:0:"";i:13;s:11:"VEJY3_00105";i:14;s:11:"Single gene";i:15;s:7:"3337958";i:16;s:11:"VEJY3_00105";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"334173-334321";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"334392-335385";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:46:"Thiamine transporter substrate binding subunit";i:13;s:11:"VEJY3_01555";i:14;s:6:"Operon";i:15;s:7:"1323405";i:16;s:47:"VEJY3_01565;VEJY3_01560(thiP);VEJY3_01555(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1089295-1089383";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1088587-1089178";i:10;s:1:"-";i:11;s:11:"VEJY3_04780";i:12;s:23:"Uncharacterized protein";i:13;s:11:"VEJY3_04780";i:14;s:11:"single gene";i:15;s:7:"3338335";i:16;s:11:"VEJY3_04780";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1246418-1246598";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1246707-1248309";i:10;s:1:"+";i:11;s:11:"VEJY3_05540";i:12;s:0:"";i:13;s:11:"VEJY3_05540";i:14;s:11:"Single gene";i:15;s:7:"3338392";i:16;s:11:"VEJY3_05540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1821254-1821354";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1821469-1822843";i:10;s:1:"+";i:11;s:11:"VEJY3_08150";i:12;s:24:"Sodium/alanine symporter";i:13;s:11:"VEJY3_08150";i:14;s:11:"Single gene";i:15;s:7:"3338626";i:16;s:11:"VEJY3_08150";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2424078-2424215";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2422486-2422999";i:10;s:1:"-";i:11;s:11:"VEJY3_10885";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:11:"VEJY3_10885";i:14;s:6:"Operon";i:15;s:7:"1323755";i:16;s:59:"VEJY3_10870;VEJY3_10875(moaD);VEJY3_10880(moaC);VEJY3_10885";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3108748-3108926";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3109025-3110378";i:10;s:1:"+";i:11;s:11:"VEJY3_13915";i:12;s:14:"Aspartokinase ";i:13;s:11:"VEJY3_13915";i:14;s:11:"Single gene";i:15;s:7:"3339118";i:16;s:11:"VEJY3_13915";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3337369-3337573";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3335475-3337311";i:10;s:1:"-";i:11;s:11:"VEJY3_14850";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:11:"VEJY3_14850";i:14;s:11:"Single gene";i:15;s:7:"3339210";i:16;s:11:"VEJY3_14850";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016613.1";i:2;s:28:"Vibrio sp. EJY3 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3423070-3423168";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3420978-3422919";i:10;s:1:"-";i:11;s:11:"VEJY3_15250";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"VEJY3_15250";i:14;s:6:"Operon";i:15;s:7:"1323918";i:16;s:89:"VEJY3_15225(thiH);VEJY3_15230(thiG);VEJY3_15235;VEJY3_15240;VEJY3_15245(thiE);VEJY3_15250";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
