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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
145540-145658
(-)
SAM
144136-145366 (-)
Niako_0119
Cystathionine gamma-lyase
Niako_0119
Operon
DOOR ID:
945120
Niako_0117,
Niako_0118,
Niako_0119
View Structure
2
392053-392158
(-)
TPP
389567-391994 (-)
Niako_0323
TonB-dependent receptor
Niako_0323
Single gene
DOOR ID:
3332982
Niako_0323
View Structure
3
1777116-1777183
(-)
fluoride
1775724-1777080 (-)
Niako_1436
Cl-channel voltage-gated family protein
Niako_1436
Single gene
DOOR ID:
3333276
Niako_1436
View Structure
4
2694745-2694881
(+)
TPP
2694904-2695960 (-)
Niako_2226
Glycosyl transferase family 9
Niako_2226
Single gene
DOOR ID:
3333488
Niako_2226
View Structure
5
3916929-3917147
(-)
cobalamin
3914821-3916828 (-)
Niako_3095
TonB-dependent receptor
Niako_3095
Operon
DOOR ID:
945767
Niako_3094,
Niako_3095
View Structure
6
4488211-4488305
(-)
TPP
4487939-4488143 (-)
Niako_3578
Sulfur carrier protein ThiS
Niako_3578
Operon
DOOR ID:
945867
Niako_3572,
Niako_3573,
Niako_3574,
Niako_3575,
Niako_3576,
Niako_3577,
Niako_3578
View Structure
7
6836351-6836566
(-)
cobalamin
6833881-6836197 (-)
Niako_5488
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Niako_5488
Operon
DOOR ID:
946263
Niako_5487,
Niako_5488
View Structure
8
8374294-8374556
(-)
cobalamin
8373595-8374168 (-)
Niako_6841
Niako_6841
Operon
DOOR ID:
946578
Niako_6834,
Niako_6835,
Niako_6836,
Niako_6837,
Niako_6838,
Niako_6839,
Niako_6840,
Niako_6841
View Structure
Genome:
Niastella koreensis GR20-10
(
NC_016609.1
);
Phylum:
Bacteroidetes/Chlorobi group
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