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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
531540-531604
(+)
ykkC-III
531615-531933 (+)
MycrhN_0514
MycrhN_0514
single gene
DOOR ID:
3330550
MycrhN_0514
View Structure
2
537535-537657
(+)
SAM-IV
537699-539046 (+)
MycrhN_0519
OAH/OAS sulfhydrylase
MycrhN_0519
Operon
DOOR ID:
1205063
MycrhN_0521,
MycrhN_0520,
MycrhN_0519
View Structure
3
1178497-1178603
(-)
ykkC-yxkD
1176927-1178472 (-)
MycrhN_1158
Na+/proline symporter
MycrhN_1158
Single gene
DOOR ID:
3330740
MycrhN_1158
View Structure
4
1178724-1178789
(+)
ykkC-III
1178799-1179948 (+)
MycrhN_1160
MycrhN_1160
operon
DOOR ID:
1205205
MycrhN_1162,
MycrhN_1161,
MycrhN_1160
View Structure
5
1261524-1261632
(+)
TPP
1263105-1263942 (+)
MycrhN_1246
Phosphomethylpyrimidine kinase
MycrhN_1246
Operon
DOOR ID:
1205225
MycrhN_1247,
MycrhN_1246,
MycrhN_1245
View Structure
6
1277344-1277454
(-)
TPP
1276131-1276329 (-)
MycrhN_1260
Thiamine biosynthesis protein ThiS
MycrhN_1260
Operon
DOOR ID:
1205229
MycrhN_1261,
MycrhN_1260,
MycrhN_1259,
MycrhN_1258,
MycrhN_1257,
MycrhN_1256
View Structure
7
2239002-2239125
(+)
AdoCbl
2239130-2239355 (+)
MycrhN_2207
Putative cobalt transporter subunit (CbtB)
MycrhN_2207
Operon
DOOR ID:
1205433
MycrhN_2209,
MycrhN_2208,
MycrhN_2207
View Structure
8
2645065-2645246
(-)
ydaO-yuaA
2643617-2645054 (-)
MycrhN_2631
Chemotaxis protein histidine kinase-like protein
MycrhN_2631
Single gene
DOOR ID:
3331155
MycrhN_2631
View Structure
9
4876156-4876254
(+)
glycine
4876393-4879297 (+)
MycrhN_4819
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MycrhN_4819
Single gene
DOOR ID:
3331809
MycrhN_4819
View Structure
10
5209610-5209686
(-)
SAH
5205830-5209595 (-)
MycrhN_5125
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
MycrhN_5125
Operon
DOOR ID:
1206059
MycrhN_5121,
MycrhN_5122,
MycrhN_5123,
MycrhN_5124,
MycrhN_5125
View Structure
11
6228150-6228224
(-)
fluoride
6227609-6228089 (-)
MycrhN_6151
Putative fluoride ion transporter CrcB
MycrhN_6151
Operon
DOOR ID:
1206291
MycrhN_6146,
MycrhN_6147,
MycrhN_6148,
MycrhN_6149,
MycrhN_6150,
MycrhN_6151
View Structure
Genome:
Mycobacterium rhodesiae NBB3
(
NC_016604.1
);
Phylum:
Actinobacteria
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";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"537535-537657";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"537699-539046";i:10;s:1:"+";i:11;s:11:"MycrhN_0519";i:12;s:21:"OAH/OAS sulfhydrylase";i:13;s:11:"MycrhN_0519";i:14;s:6:"Operon";i:15;s:7:"1205063";i:16;s:35:"MycrhN_0521;MycrhN_0520;MycrhN_0519";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1178497-1178603";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1176927-1178472";i:10;s:1:"-";i:11;s:11:"MycrhN_1158";i:12;s:21:"Na+/proline symporter";i:13;s:11:"MycrhN_1158";i:14;s:11:"Single gene";i:15;s:7:"3330740";i:16;s:11:"MycrhN_1158";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1178724-1178789";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1178799-1179948";i:10;s:1:"+";i:11;s:11:"MycrhN_1160";i:12;s:0:"";i:13;s:11:"MycrhN_1160";i:14;s:6:"operon";i:15;s:7:"1205205";i:16;s:35:"MycrhN_1162;MycrhN_1161;MycrhN_1160";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1261524-1261632";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1263105-1263942";i:10;s:1:"+";i:11;s:11:"MycrhN_1246";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:11:"MycrhN_1246";i:14;s:6:"Operon";i:15;s:7:"1205225";i:16;s:35:"MycrhN_1247;MycrhN_1246;MycrhN_1245";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1277344-1277454";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1276131-1276329";i:10;s:1:"-";i:11;s:11:"MycrhN_1260";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:11:"MycrhN_1260";i:14;s:6:"Operon";i:15;s:7:"1205229";i:16;s:71:"MycrhN_1261;MycrhN_1260;MycrhN_1259;MycrhN_1258;MycrhN_1257;MycrhN_1256";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2239002-2239125";i:6;s:1:"+";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:15:"2239130-2239355";i:10;s:1:"+";i:11;s:11:"MycrhN_2207";i:12;s:42:"Putative cobalt transporter subunit (CbtB)";i:13;s:11:"MycrhN_2207";i:14;s:6:"Operon";i:15;s:7:"1205433";i:16;s:35:"MycrhN_2209;MycrhN_2208;MycrhN_2207";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2645065-2645246";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2643617-2645054";i:10;s:1:"-";i:11;s:11:"MycrhN_2631";i:12;s:48:"Chemotaxis protein histidine kinase-like protein";i:13;s:11:"MycrhN_2631";i:14;s:11:"Single gene";i:15;s:7:"3331155";i:16;s:11:"MycrhN_2631";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4876156-4876254";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4876393-4879297";i:10;s:1:"+";i:11;s:11:"MycrhN_4819";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:11:"MycrhN_4819";i:14;s:11:"Single gene";i:15;s:7:"3331809";i:16;s:11:"MycrhN_4819";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5209610-5209686";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"5205830-5209595";i:10;s:1:"-";i:11;s:11:"MycrhN_5125";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:11:"MycrhN_5125";i:14;s:6:"Operon";i:15;s:7:"1206059";i:16;s:59:"MycrhN_5121;MycrhN_5122;MycrhN_5123;MycrhN_5124;MycrhN_5125";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016604.1";i:2;s:29:"Mycobacterium rhodesiae NBB3 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6228150-6228224";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"6227609-6228089";i:10;s:1:"-";i:11;s:11:"MycrhN_6151";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"MycrhN_6151";i:14;s:6:"Operon";i:15;s:7:"1206291";i:16;s:71:"MycrhN_6146;MycrhN_6147;MycrhN_6148;MycrhN_6149;MycrhN_6150;MycrhN_6151";i:17;s:0:"";i:18;s:15:"View Structure ";}}