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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
100382-100532
(-)
FMN
99631-100291 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BDGL_000093
Single gene
DOOR ID:
3328723
BDGL_000093
(ribB)
View Structure
2
639569-639664
(+)
ykkC-yxkD
639692-640433 (+)
BDGL_000611
BDGL_000611
Operon
DOOR ID:
943632
BDGL_000611,
BDGL_000612,
BDGL_000613
View Structure
3
1574472-1574560
(-)
glycine
1573050-1574295 (-)
dadA3
D-amino acid dehydrogenase; small subunit
BDGL_001469
Single gene
DOOR ID:
3329330
BDGL_001469
(dadA3)
View Structure
4
1957486-1957589
(+)
SAH
1957624-1959007 (+)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BDGL_001827
Operon
DOOR ID:
943851
BDGL_001827
(sahH)
,
BDGL_001828
(metF)
,
BDGL_001829
View Structure
5
2533434-2533641
(+)
cobalamin
2533664-2535515 (+)
btuB
TonB-dependent receptor
BDGL_002337
Single gene
DOOR ID:
3329754
BDGL_002337
(btuB)
View Structure
6
2996726-2996911
(-)
yybP-ykoY
2996134-2996710 (-)
BDGL_002791
BDGL_002791
Single gene
DOOR ID:
3329970
BDGL_002791
View Structure
7
3397758-3397892
(-)
TPP
3395790-3397668 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BDGL_003162
Operon
DOOR ID:
944108
BDGL_003160
(icc)
,
BDGL_003161
(aspP)
,
BDGL_003162
(thiC)
View Structure
8
3541797-3541863
(+)
fluoride
3541987-3542368 (+)
crcB
Putative fluoride ion transporter CrcB
BDGL_003297
Operon
DOOR ID:
944138
BDGL_003297
(crcB)
,
BDGL_003298
View Structure
Genome:
Acinetobacter calcoaceticus PHEA-2
(
NC_016603.1
);
Phylum:
Gammaproteobacteria
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