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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
329539-329653
(-)
yybP-ykoY
328892-329447 (-)
vfu_A00302
Integral membrane protein
vfu_A00302
Single gene
DOOR ID:
3327470
vfu_A00302
View Structure
2
395096-395194
(+)
TPP
395304-397254 (+)
vfu_A00368
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
vfu_A00368
Operon
DOOR ID:
1322165
vfu_A00373,
vfu_A00372,
vfu_A00371,
vfu_A00370,
vfu_A00369,
vfu_A00368
View Structure
3
503322-503518
(+)
cobalamin
503566-505393 (+)
vfu_A00486
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
vfu_A00486
Operon
DOOR ID:
1322188
vfu_A00488,
vfu_A00487,
vfu_A00486
View Structure
4
736865-737025
(+)
TPP
737086-738076 (+)
vfu_A00723
Thiamine ABC transporter; periplasmic thiamin-binding protein
vfu_A00723
Operon
DOOR ID:
1322229
vfu_A00725,
vfu_A00724,
vfu_A00723
View Structure
5
1548605-1548722
(-)
TPP
1547621-1548476 (-)
vfu_A01491
Phosphomethylpyrimidine kinase
vfu_A01491
Operon
DOOR ID:
1322371
vfu_A01491,
vfu_A01490,
vfu_A01489
View Structure
6
1648690-1648872
(+)
lysine
1648983-1650579 (+)
vfu_A01588
Na+/H+ antiporter family
vfu_A01588
Single gene
DOOR ID:
3327924
vfu_A01588
View Structure
7
1685043-1685128
(-)
c-di-GMP-I
1684334-1684898 (-)
vfu_A01621
Uncharacterized protein
vfu_A01621
single gene
DOOR ID:
3327937
vfu_A01621
View Structure
8
2046153-2046257
(+)
glycine
2046444-2047746 (+)
vfu_A01952
Sodium/alanine symporter
vfu_A01952
Single gene
DOOR ID:
3328072
vfu_A01952
View Structure
9
2128409-2128570
(-)
yybP-ykoY
2127169-2128141 (-)
vfu_A02031
Ca2+/Na+ antiporter
vfu_A02031
Operon
DOOR ID:
1322464
vfu_A02029,
vfu_A02030,
vfu_A02031
View Structure
10
2669095-2669233
(-)
MOCO
2667533-2668046 (-)
vfu_A02577
Molybdenum cofactor biosynthesis protein B
vfu_A02577
Operon
DOOR ID:
1322554
vfu_A02574,
vfu_A02575,
vfu_A02576,
vfu_A02577,
vfu_A02578
View Structure
11
2958016-2958115
(+)
purine
2958196-2959204 (+)
vfu_A02840
Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)
vfu_A02840
Single gene
DOOR ID:
3328434
vfu_A02840
View Structure
12
3263382-3263559
(+)
lysine
3263666-3265013 (+)
vfu_A03126
Aspartokinase
vfu_A03126
Single gene
DOOR ID:
3328546
vfu_A03126
View Structure
Genome:
Vibrio furnissii NCTC 11218 chromosome I
(
NC_016602.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"329539-329653";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"328892-329447";i:10;s:1:"-";i:11;s:10:"vfu_A00302";i:12;s:25:"Integral membrane protein";i:13;s:10:"vfu_A00302";i:14;s:11:"Single gene";i:15;s:7:"3327470";i:16;s:10:"vfu_A00302";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"395096-395194";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"395304-397254";i:10;s:1:"+";i:11;s:10:"vfu_A00368";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"vfu_A00368";i:14;s:6:"Operon";i:15;s:7:"1322165";i:16;s:65:"vfu_A00373;vfu_A00372;vfu_A00371;vfu_A00370;vfu_A00369;vfu_A00368";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"503322-503518";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"503566-505393";i:10;s:1:"+";i:11;s:10:"vfu_A00486";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"vfu_A00486";i:14;s:6:"Operon";i:15;s:7:"1322188";i:16;s:32:"vfu_A00488;vfu_A00487;vfu_A00486";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"736865-737025";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"737086-738076";i:10;s:1:"+";i:11;s:10:"vfu_A00723";i:12;s:61:"Thiamine ABC transporter; periplasmic thiamin-binding protein";i:13;s:10:"vfu_A00723";i:14;s:6:"Operon";i:15;s:7:"1322229";i:16;s:32:"vfu_A00725;vfu_A00724;vfu_A00723";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1548605-1548722";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1547621-1548476";i:10;s:1:"-";i:11;s:10:"vfu_A01491";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:10:"vfu_A01491";i:14;s:6:"Operon";i:15;s:7:"1322371";i:16;s:32:"vfu_A01491;vfu_A01490;vfu_A01489";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1648690-1648872";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1648983-1650579";i:10;s:1:"+";i:11;s:10:"vfu_A01588";i:12;s:24:"Na+/H+ antiporter family";i:13;s:10:"vfu_A01588";i:14;s:11:"Single gene";i:15;s:7:"3327924";i:16;s:10:"vfu_A01588";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1685043-1685128";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1684334-1684898";i:10;s:1:"-";i:11;s:10:"vfu_A01621";i:12;s:23:"Uncharacterized protein";i:13;s:10:"vfu_A01621";i:14;s:11:"single gene";i:15;s:7:"3327937";i:16;s:10:"vfu_A01621";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2046153-2046257";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2046444-2047746";i:10;s:1:"+";i:11;s:10:"vfu_A01952";i:12;s:24:"Sodium/alanine symporter";i:13;s:10:"vfu_A01952";i:14;s:11:"Single gene";i:15;s:7:"3328072";i:16;s:10:"vfu_A01952";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2128409-2128570";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2127169-2128141";i:10;s:1:"-";i:11;s:10:"vfu_A02031";i:12;s:19:"Ca2+/Na+ antiporter";i:13;s:10:"vfu_A02031";i:14;s:6:"Operon";i:15;s:7:"1322464";i:16;s:32:"vfu_A02029;vfu_A02030;vfu_A02031";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2669095-2669233";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2667533-2668046";i:10;s:1:"-";i:11;s:10:"vfu_A02577";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"vfu_A02577";i:14;s:6:"Operon";i:15;s:7:"1322554";i:16;s:54:"vfu_A02574;vfu_A02575;vfu_A02576;vfu_A02577;vfu_A02578";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2958016-2958115";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2958196-2959204";i:10;s:1:"+";i:11;s:10:"vfu_A02840";i:12;s:55:"Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)";i:13;s:10:"vfu_A02840";i:14;s:11:"Single gene";i:15;s:7:"3328434";i:16;s:10:"vfu_A02840";i:17;s:116:"adenine catabolic process [GO:0006146]; hypoxanthine salvage [GO:0043103]; nucleotide metabolic process [GO:0009117]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016602.1";i:2;s:40:"Vibrio furnissii NCTC 11218 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3263382-3263559";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3263666-3265013";i:10;s:1:"+";i:11;s:10:"vfu_A03126";i:12;s:14:"Aspartokinase ";i:13;s:10:"vfu_A03126";i:14;s:11:"Single gene";i:15;s:7:"3328546";i:16;s:10:"vfu_A03126";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
