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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
132843-132937
(+)
TPP
134674-134851 (+)
TIA2EST2_00545
TIA2EST2_00545
Operon
DOOR ID:
1320836
TIA2EST2_00545,
TIA2EST2_00550
(thiE)
View Structure
2
187831-187934
(+)
TPP
187968-188598 (+)
TIA2EST2_00780
TIA2EST2_00780
Operon
DOOR ID:
1320847
TIA2EST2_00780,
TIA2EST2_00785
View Structure
3
373410-373595
(-)
cobalamin
372348-373374 (-)
TIA2EST2_01610
TIA2EST2_01610
Operon
DOOR ID:
1320878
TIA2EST2_01600,
TIA2EST2_01605,
TIA2EST2_01610
View Structure
4
445631-445768
(+)
cobalamin
445799-446555 (+)
TIA2EST2_01990
TIA2EST2_01990
Operon
DOOR ID:
1320896
TIA2EST2_01990,
TIA2EST2_01995,
TIA2EST2_02000,
TIA2EST2_02005,
TIA2EST2_02010
View Structure
5
452960-453138
(+)
cobalamin
453225-454245 (+)
TIA2EST2_02020
TIA2EST2_02020
Operon
DOOR ID:
1320897
TIA2EST2_02015,
TIA2EST2_02020,
TIA2EST2_02025,
TIA2EST2_02030
View Structure
6
462695-462809
(+)
cobalamin
462851-463466 (+)
TIA2EST2_02075
TIA2EST2_02075
Operon
DOOR ID:
1320899
TIA2EST2_02075,
TIA2EST2_02080,
TIA2EST2_02085
View Structure
7
467472-467579
(+)
cobalamin
467673-469341 (+)
TIA2EST2_02095
TIA2EST2_02095
Operon
DOOR ID:
1320900
TIA2EST2_02095,
TIA2EST2_02100,
TIA2EST2_02105
View Structure
8
556493-556604
(-)
TPP
554976-555246 (-)
TIA2EST2_02515
TIA2EST2_02515
Operon
DOOR ID:
1320917
TIA2EST2_02505,
TIA2EST2_02510
(thiG)
,
TIA2EST2_02515,
TIA2EST2_02520
View Structure
9
638971-639223
(+)
cobalamin
639302-641213 (+)
TIA2EST2_02920
TIA2EST2_02920
Operon
DOOR ID:
1320933
TIA2EST2_02920,
TIA2EST2_02925
View Structure
10
702279-702465
(+)
cobalamin
702505-703519 (+)
TIA2EST2_03225
TIA2EST2_03225
Operon
DOOR ID:
1320947
TIA2EST2_03225,
TIA2EST2_03230,
TIA2EST2_03235,
TIA2EST2_03240
View Structure
11
845976-846118
(+)
cobalamin
846493-847765 (+)
TIA2EST2_03895
TIA2EST2_03895
Single gene
DOOR ID:
3316002
TIA2EST2_03895
View Structure
12
928382-928495
(+)
TPP
929283-929934 (+)
TIA2EST2_04335
TIA2EST2_04335
Operon
DOOR ID:
1320993
TIA2EST2_04330,
TIA2EST2_04335
View Structure
13
1763390-1763461
(-)
cobalamin
1762318-1763194 (-)
TIA2EST2_08095
TIA2EST2_08095
Operon
DOOR ID:
1321151
TIA2EST2_08085,
TIA2EST2_08090,
TIA2EST2_08095
View Structure
14
1856435-1856569
(-)
FMN
1855365-1856361 (-)
TIA2EST2_08530
TIA2EST2_08530
Operon
DOOR ID:
1321169
TIA2EST2_08505
(purH)
,
TIA2EST2_08510
(purN)
,
TIA2EST2_08515
(ribH)
,
TIA2EST2_08520,
TIA2EST2_08525,
TIA2EST2_08530
View Structure
15
2009218-2009285
(+)
cobalamin
2009480-2011667 (+)
TIA2EST2_09260
TIA2EST2_09260
Operon
DOOR ID:
1321198
TIA2EST2_09260,
TIA2EST2_09265
View Structure
16
2223644-2223844
(+)
cobalamin
2223955-2226526 (+)
TIA2EST2_10270
TIA2EST2_10270
Operon
DOOR ID:
1321240
TIA2EST2_10270,
TIA2EST2_10275
(nrdF)
View Structure
17
2246709-2246950
(-)
cobalamin
2244290-2246633 (-)
TIA2EST2_10360
TIA2EST2_10360
Operon
DOOR ID:
1321242
TIA2EST2_10355,
TIA2EST2_10360
View Structure
Genome:
Propionibacterium acnes TypeIA2 P.acn33
(
NC_016516.1
);
Phylum:
Actinobacteria
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";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"556493-556604";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"554976-555246";i:10;s:1:"-";i:11;s:14:"TIA2EST2_02515";i:12;s:0:"";i:13;s:14:"TIA2EST2_02515";i:14;s:6:"Operon";i:15;s:7:"1320917";i:16;s:65:"TIA2EST2_02505;TIA2EST2_02510(thiG);TIA2EST2_02515;TIA2EST2_02520";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"638971-639223";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"639302-641213";i:10;s:1:"+";i:11;s:14:"TIA2EST2_02920";i:12;s:0:"";i:13;s:14:"TIA2EST2_02920";i:14;s:6:"Operon";i:15;s:7:"1320933";i:16;s:29:"TIA2EST2_02920;TIA2EST2_02925";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"702279-702465";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"702505-703519";i:10;s:1:"+";i:11;s:14:"TIA2EST2_03225";i:12;s:0:"";i:13;s:14:"TIA2EST2_03225";i:14;s:6:"Operon";i:15;s:7:"1320947";i:16;s:59:"TIA2EST2_03225;TIA2EST2_03230;TIA2EST2_03235;TIA2EST2_03240";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"845976-846118";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"846493-847765";i:10;s:1:"+";i:11;s:14:"TIA2EST2_03895";i:12;s:0:"";i:13;s:14:"TIA2EST2_03895";i:14;s:11:"Single gene";i:15;s:7:"3316002";i:16;s:14:"TIA2EST2_03895";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"928382-928495";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"929283-929934";i:10;s:1:"+";i:11;s:14:"TIA2EST2_04335";i:12;s:0:"";i:13;s:14:"TIA2EST2_04335";i:14;s:6:"Operon";i:15;s:7:"1320993";i:16;s:29:"TIA2EST2_04330;TIA2EST2_04335";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1763390-1763461";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1762318-1763194";i:10;s:1:"-";i:11;s:14:"TIA2EST2_08095";i:12;s:0:"";i:13;s:14:"TIA2EST2_08095";i:14;s:6:"Operon";i:15;s:7:"1321151";i:16;s:44:"TIA2EST2_08085;TIA2EST2_08090;TIA2EST2_08095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1856435-1856569";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1855365-1856361";i:10;s:1:"-";i:11;s:14:"TIA2EST2_08530";i:12;s:0:"";i:13;s:14:"TIA2EST2_08530";i:14;s:6:"Operon";i:15;s:7:"1321169";i:16;s:107:"TIA2EST2_08505(purH);TIA2EST2_08510(purN);TIA2EST2_08515(ribH);TIA2EST2_08520;TIA2EST2_08525;TIA2EST2_08530";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2009218-2009285";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2009480-2011667";i:10;s:1:"+";i:11;s:14:"TIA2EST2_09260";i:12;s:0:"";i:13;s:14:"TIA2EST2_09260";i:14;s:6:"Operon";i:15;s:7:"1321198";i:16;s:29:"TIA2EST2_09260;TIA2EST2_09265";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2223644-2223844";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2223955-2226526";i:10;s:1:"+";i:11;s:14:"TIA2EST2_10270";i:12;s:0:"";i:13;s:14:"TIA2EST2_10270";i:14;s:6:"Operon";i:15;s:7:"1321240";i:16;s:35:"TIA2EST2_10270;TIA2EST2_10275(nrdF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_016516.1";i:2;s:40:"Propionibacterium acnes TypeIA2 P.acn33 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2246709-2246950";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2244290-2246633";i:10;s:1:"-";i:11;s:14:"TIA2EST2_10360";i:12;s:0:"";i:13;s:14:"TIA2EST2_10360";i:14;s:6:"Operon";i:15;s:7:"1321242";i:16;s:29:"TIA2EST2_10355;TIA2EST2_10360";i:17;s:0:"";i:18;s:15:"View Structure ";}}
