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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
228438-228547
(-)
TPP
226463-228359 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcWSU1_00221
Operon
DOOR ID:
1202264
EcWSU1_00221
(thiC)
,
EcWSU1_00220
(thiE)
,
EcWSU1_00219
(thiF)
,
EcWSU1_00218
(thiS)
,
EcWSU1_00217
(thiG)
,
EcWSU1_00216
(thiH)
View Structure
2
373265-373309
(+)
mini-ykkC
373337-373655 (+)
sugE
EcWSU1_00352
Single gene
DOOR ID:
3314034
EcWSU1_00352
(sugE)
View Structure
3
489171-489285
(+)
Mg sensor
489377-492092 (+)
mgtA
Magnesium-transporting ATPase; P-type 1
EcWSU1_00462
Single gene
DOOR ID:
3314075
EcWSU1_00462
(mgtA)
View Structure
4
715757-715857
(-)
TPP
713155-714766 (-)
thiP
Thiamine transport system permease protein thiP
EcWSU1_00680
Operon
DOOR ID:
1202354
EcWSU1_00679
(thiQ)
,
EcWSU1_00680
(thiP)
,
EcWSU1_00681
(thiB)
View Structure
5
1393343-1393477
(+)
MOCO
1394478-1394991 (+)
moaB
Molybdenum cofactor biosynthesis protein B
EcWSU1_01326
Operon
DOOR ID:
1202500
EcWSU1_01325
(moaA)
,
EcWSU1_01326
(moaB)
,
EcWSU1_01327
(moaC)
,
EcWSU1_01328
(moaD)
,
EcWSU1_01329
(moaE)
,
EcWSU1_01330
(ybhL)
View Structure
6
1673626-1673795
(-)
ykoK
1671352-1672522 (+)
lacI
Lactose operon repressor
EcWSU1_01593
Single gene
DOOR ID:
3314491
EcWSU1_01593
(lacI)
View Structure
7
2055309-2055407
(+)
ykkC-yxkD
2055464-2056523 (+)
EcWSU1_01995
EcWSU1_01995
Operon
DOOR ID:
1202617
EcWSU1_01995,
EcWSU1_01996
(tauC)
,
EcWSU1_01997
(cmpD)
,
EcWSU1_01998
View Structure
8
2059582-2059628
(+)
mini-ykkC
2059646-2063249 (+)
accC
EcWSU1_02002
Operon
DOOR ID:
1202618
EcWSU1_02002
(accC)
,
EcWSU1_02003
(gatA)
View Structure
9
2841629-2841818
(+)
yybP-ykoY
2841828-2842395 (+)
yebN
Putative manganese efflux pump MntP
EcWSU1_02745
Single gene
DOOR ID:
3314993
EcWSU1_02745
(yebN)
View Structure
10
3135392-3135489
(-)
TPP
3134585-3135356 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcWSU1_03020
Operon
DOOR ID:
1202804
EcWSU1_03018
(yegW)
,
EcWSU1_03019
(thiD)
,
EcWSU1_03020
(thiM)
View Structure
11
3995920-3996070
(-)
FMN
3995160-3995814 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcWSU1_03831
Single gene
DOOR ID:
3315360
EcWSU1_03831
(ribB)
View Structure
12
4583094-4583270
(-)
cobalamin
4581180-4583043 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EcWSU1_04405
Operon
DOOR ID:
1203085
EcWSU1_04404
(murI)
,
EcWSU1_04405
(btuB)
View Structure
Genome:
Enterobacter cloacae EcWSU1
(
NC_016514.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"228438-228547";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226463-228359";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"EcWSU1_00221";i:14;s:6:"Operon";i:15;s:7:"1202264";i:16;s:113:"EcWSU1_00221(thiC);EcWSU1_00220(thiE);EcWSU1_00219(thiF);EcWSU1_00218(thiS);EcWSU1_00217(thiG);EcWSU1_00216(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"373265-373309";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"373337-373655";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:12:"EcWSU1_00352";i:14;s:11:"Single gene";i:15;s:7:"3314034";i:16;s:18:"EcWSU1_00352(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"489171-489285";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:13:"489377-492092";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:39:"Magnesium-transporting ATPase; P-type 1";i:13;s:12:"EcWSU1_00462";i:14;s:11:"Single gene";i:15;s:7:"3314075";i:16;s:18:"EcWSU1_00462(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"715757-715857";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"713155-714766";i:10;s:1:"-";i:11;s:4:"thiP";i:12;s:47:"Thiamine transport system permease protein thiP";i:13;s:12:"EcWSU1_00680";i:14;s:6:"Operon";i:15;s:7:"1202354";i:16;s:56:"EcWSU1_00679(thiQ);EcWSU1_00680(thiP);EcWSU1_00681(thiB)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1393343-1393477";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1394478-1394991";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:12:"EcWSU1_01326";i:14;s:6:"Operon";i:15;s:7:"1202500";i:16;s:113:"EcWSU1_01325(moaA);EcWSU1_01326(moaB);EcWSU1_01327(moaC);EcWSU1_01328(moaD);EcWSU1_01329(moaE);EcWSU1_01330(ybhL)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1673626-1673795";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1671352-1672522";i:10;s:1:"+";i:11;s:4:"lacI";i:12;s:24:"Lactose operon repressor";i:13;s:12:"EcWSU1_01593";i:14;s:11:"Single gene";i:15;s:7:"3314491";i:16;s:18:"EcWSU1_01593(lacI)";i:17;s:98:"regulation of transcription; DNA-templated [GO:0006355]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2055309-2055407";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2055464-2056523";i:10;s:1:"+";i:11;s:12:"EcWSU1_01995";i:12;s:0:"";i:13;s:12:"EcWSU1_01995";i:14;s:6:"Operon";i:15;s:7:"1202617";i:16;s:63:"EcWSU1_01995;EcWSU1_01996(tauC);EcWSU1_01997(cmpD);EcWSU1_01998";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2059582-2059628";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2059646-2063249";i:10;s:1:"+";i:11;s:4:"accC";i:12;s:0:"";i:13;s:12:"EcWSU1_02002";i:14;s:6:"Operon";i:15;s:7:"1202618";i:16;s:37:"EcWSU1_02002(accC);EcWSU1_02003(gatA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2841629-2841818";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2841828-2842395";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:12:"EcWSU1_02745";i:14;s:11:"Single gene";i:15;s:7:"3314993";i:16;s:18:"EcWSU1_02745(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3135392-3135489";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3134585-3135356";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:12:"EcWSU1_03020";i:14;s:6:"Operon";i:15;s:7:"1202804";i:16;s:56:"EcWSU1_03018(yegW);EcWSU1_03019(thiD);EcWSU1_03020(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3995920-3996070";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3995160-3995814";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"EcWSU1_03831";i:14;s:11:"Single gene";i:15;s:7:"3315360";i:16;s:18:"EcWSU1_03831(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016514.1";i:2;s:28:"Enterobacter cloacae EcWSU1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4583094-4583270";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4581180-4583043";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:12:"EcWSU1_04405";i:14;s:6:"Operon";i:15;s:7:"1203085";i:16;s:37:"EcWSU1_04404(murI);EcWSU1_04405(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
