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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
570014-570153
(+)
MOCO
571190-571703 (+)
moaB
Vch1786_I0529
Operon
DOOR ID:
1318899
Vch1786_I0532
(moaE)
,
Vch1786_I0531
(moaD)
,
Vch1786_I0530
(moaC)
,
Vch1786_I0529
(moaB)
,
Vch1786_I0528
(moaA)
View Structure
2
675966-676148
(+)
lysine
676263-677865 (+)
Vch1786_I0635
Vch1786_I0635
Single gene
DOOR ID:
3309075
Vch1786_I0635
View Structure
3
851904-852014
(+)
TPP
852073-852922 (+)
thiD
Vch1786_I0798
Single gene
DOOR ID:
3309151
Vch1786_I0798
(thiD)
View Structure
4
961754-961801
(+)
mini-ykkC
961817-962132 (+)
sugE
Vch1786_I0893
Single gene
DOOR ID:
3309200
Vch1786_I0893
(sugE)
View Structure
5
997421-997520
(-)
glycine
995951-997328 (-)
Vch1786_I0921
Vch1786_I0921
Single gene
DOOR ID:
3309209
Vch1786_I0921
View Structure
6
1258098-1258267
(+)
ykoK
1258369-1259722 (+)
Vch1786_I1153
Vch1786_I1153
Single gene
DOOR ID:
3309286
Vch1786_I1153
View Structure
7
1332090-1332176
(+)
c-di-GMP-I
1332289-1332877 (+)
Vch1786_I1221
Vch1786_I1221
single gene
DOOR ID:
3309318
Vch1786_I1221
View Structure
8
2192556-2192693
(-)
TPP
2191499-2192492 (-)
tbpA
Vch1786_I2035
Operon
DOOR ID:
1319185
Vch1786_I2033,
Vch1786_I2034
(thiP)
,
Vch1786_I2035
(tbpA)
View Structure
9
2408887-2409090
(-)
cobalamin
2407007-2408843 (-)
btuB
Vch1786_I2254
Single gene
DOOR ID:
3309713
Vch1786_I2254
(btuB)
View Structure
10
2494320-2494418
(-)
TPP
2492281-2494219 (-)
thiC
Vch1786_I2345
Operon
DOOR ID:
1319243
Vch1786_I2343
(thiF)
,
Vch1786_I2344
(thiE)
,
Vch1786_I2345
(thiC)
View Structure
11
2534018-2534127
(-)
yybP-ykoY
2533370-2533925 (-)
Vch1786_I2390
Vch1786_I2390
Single gene
DOOR ID:
3309766
Vch1786_I2390
View Structure
12
2838439-2838616
(-)
lysine
2836972-2838328 (-)
lysC
Vch1786_I2701
Single gene
DOOR ID:
3309862
Vch1786_I2701
(lysC)
View Structure
Genome:
Vibrio cholerae O1 str. 2010EL-1786 chromosome I
(
NC_016445.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"570014-570153";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"571190-571703";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:13:"Vch1786_I0529";i:14;s:6:"Operon";i:15;s:7:"1318899";i:16;s:99:"Vch1786_I0532(moaE);Vch1786_I0531(moaD);Vch1786_I0530(moaC);Vch1786_I0529(moaB);Vch1786_I0528(moaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"675966-676148";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"676263-677865";i:10;s:1:"+";i:11;s:13:"Vch1786_I0635";i:12;s:0:"";i:13;s:13:"Vch1786_I0635";i:14;s:11:"Single gene";i:15;s:7:"3309075";i:16;s:13:"Vch1786_I0635";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"851904-852014";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"852073-852922";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:13:"Vch1786_I0798";i:14;s:11:"Single gene";i:15;s:7:"3309151";i:16;s:19:"Vch1786_I0798(thiD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"961754-961801";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"961817-962132";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:13:"Vch1786_I0893";i:14;s:11:"Single gene";i:15;s:7:"3309200";i:16;s:19:"Vch1786_I0893(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"997421-997520";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"995951-997328";i:10;s:1:"-";i:11;s:13:"Vch1786_I0921";i:12;s:0:"";i:13;s:13:"Vch1786_I0921";i:14;s:11:"Single gene";i:15;s:7:"3309209";i:16;s:13:"Vch1786_I0921";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1258098-1258267";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1258369-1259722";i:10;s:1:"+";i:11;s:13:"Vch1786_I1153";i:12;s:0:"";i:13;s:13:"Vch1786_I1153";i:14;s:11:"Single gene";i:15;s:7:"3309286";i:16;s:13:"Vch1786_I1153";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1332090-1332176";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1332289-1332877";i:10;s:1:"+";i:11;s:13:"Vch1786_I1221";i:12;s:0:"";i:13;s:13:"Vch1786_I1221";i:14;s:11:"single gene";i:15;s:7:"3309318";i:16;s:13:"Vch1786_I1221";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2192556-2192693";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2191499-2192492";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:13:"Vch1786_I2035";i:14;s:6:"Operon";i:15;s:7:"1319185";i:16;s:53:"Vch1786_I2033;Vch1786_I2034(thiP);Vch1786_I2035(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2408887-2409090";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2407007-2408843";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:13:"Vch1786_I2254";i:14;s:11:"Single gene";i:15;s:7:"3309713";i:16;s:19:"Vch1786_I2254(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2494320-2494418";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2492281-2494219";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:13:"Vch1786_I2345";i:14;s:6:"Operon";i:15;s:7:"1319243";i:16;s:59:"Vch1786_I2343(thiF);Vch1786_I2344(thiE);Vch1786_I2345(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2534018-2534127";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2533370-2533925";i:10;s:1:"-";i:11;s:13:"Vch1786_I2390";i:12;s:0:"";i:13;s:13:"Vch1786_I2390";i:14;s:11:"Single gene";i:15;s:7:"3309766";i:16;s:13:"Vch1786_I2390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016445.1";i:2;s:48:"Vibrio cholerae O1 str. 2010EL-1786 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2838439-2838616";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2836972-2838328";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:13:"Vch1786_I2701";i:14;s:11:"Single gene";i:15;s:7:"3309862";i:16;s:19:"Vch1786_I2701(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
