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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
71025-71202
(+)
cobalamin
71290-73105 (+)
Tlie_0066
TonB-dependent receptor plug
Tlie_0066
Single gene
DOOR ID:
3308381
Tlie_0066
View Structure
2
134022-134111
(-)
c-di-GMP-I
133466-133970 (-)
Tlie_0127
Uncharacterized protein
Tlie_0127
single gene
DOOR ID:
3308392
Tlie_0127
View Structure
3
157469-157652
(+)
cobalamin
157732-158782 (+)
Tlie_0149
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Tlie_0149
Single gene
DOOR ID:
3308396
Tlie_0149
View Structure
4
178381-178481
(+)
SAM
178540-179860 (+)
Tlie_0167
O-acetylhomoserine sulfhydrolase (9)
Tlie_0167
Operon
DOOR ID:
1318459
Tlie_0168,
Tlie_0167
View Structure
5
259210-259346
(+)
ydaO-yuaA
259459-260113 (+)
Tlie_0250
GCN5-related N-acetyltransferase
Tlie_0250
Single gene
DOOR ID:
3308418
Tlie_0250
View Structure
6
420639-420746
(-)
TPP
420045-420546 (-)
Tlie_0396
Proton-coupled thiamine transporter YuaJ
Tlie_0396
Single gene
DOOR ID:
3308465
Tlie_0396
View Structure
7
798718-798876
(+)
glmS
798911-800744 (+)
Tlie_0763
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Tlie_0763
Operon
DOOR ID:
1318569
Tlie_0764,
Tlie_0763
View Structure
8
1361415-1361529
(-)
glycine
1360895-1361330 (-)
Tlie_1292
GrdX protein
Tlie_1292
Single gene
DOOR ID:
3308602
Tlie_1292
View Structure
9
1548975-1549112
(-)
yybP-ykoY
1547830-1548952 (-)
Tlie_1479
Sodium ion-translocating decarboxylase; beta subunit
Tlie_1479
Single gene
DOOR ID:
3308649
Tlie_1479
View Structure
10
1716907-1716993
(+)
c-di-GMP-I
1717272-1718166 (+)
Tlie_1653
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Tlie_1653
single gene
DOOR ID:
3308699
Tlie_1653
View Structure
11
1717110-1717196
(+)
c-di-GMP-I
1717272-1718166 (+)
Tlie_1653
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Tlie_1653
single gene
DOOR ID:
3308699
Tlie_1653
View Structure
12
1811271-1811390
(+)
MOCO
1811437-1812268 (+)
Tlie_1738
ABC transporter; periplasmic substrate-binding protein
Tlie_1738
Operon
DOOR ID:
1318761
Tlie_1740,
Tlie_1739,
Tlie_1738
View Structure
13
1928930-1929024
(+)
TPP
1929114-1930392 (+)
Tlie_1850
Hydroxymethylpyrimidine synthase
Tlie_1850
Operon
DOOR ID:
1318785
Tlie_1850,
Tlie_1851
View Structure
Genome:
Thermovirga lienii DSM 17291
(
NC_016148.1
);
Phylum:
Synergistia
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nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:13:"178381-178481";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"178540-179860";i:10;s:1:"+";i:11;s:9:"Tlie_0167";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Tlie_0167";i:14;s:6:"Operon";i:15;s:7:"1318459";i:16;s:19:"Tlie_0168;Tlie_0167";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:13:"259210-259346";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"259459-260113";i:10;s:1:"+";i:11;s:9:"Tlie_0250";i:12;s:32:"GCN5-related N-acetyltransferase";i:13;s:9:"Tlie_0250";i:14;s:11:"Single gene";i:15;s:7:"3308418";i:16;s:9:"Tlie_0250";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:13:"420639-420746";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"420045-420546";i:10;s:1:"-";i:11;s:9:"Tlie_0396";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:9:"Tlie_0396";i:14;s:11:"Single gene";i:15;s:7:"3308465";i:16;s:9:"Tlie_0396";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:13:"798718-798876";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"798911-800744";i:10;s:1:"+";i:11;s:9:"Tlie_0763";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Tlie_0763";i:14;s:6:"Operon";i:15;s:7:"1318569";i:16;s:19:"Tlie_0764;Tlie_0763";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1361415-1361529";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1360895-1361330";i:10;s:1:"-";i:11;s:9:"Tlie_1292";i:12;s:12:"GrdX protein";i:13;s:9:"Tlie_1292";i:14;s:11:"Single gene";i:15;s:7:"3308602";i:16;s:9:"Tlie_1292";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1548975-1549112";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1547830-1548952";i:10;s:1:"-";i:11;s:9:"Tlie_1479";i:12;s:53:"Sodium ion-translocating decarboxylase; beta subunit ";i:13;s:9:"Tlie_1479";i:14;s:11:"Single gene";i:15;s:7:"3308649";i:16;s:9:"Tlie_1479";i:17;s:33:"sodium ion transport [GO:0006814]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1716907-1716993";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1717272-1718166";i:10;s:1:"+";i:11;s:9:"Tlie_1653";i:12;s:71:"Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase";i:13;s:9:"Tlie_1653";i:14;s:11:"single gene";i:15;s:7:"3308699";i:16;s:9:"Tlie_1653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1717110-1717196";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1717272-1718166";i:10;s:1:"+";i:11;s:9:"Tlie_1653";i:12;s:71:"Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase";i:13;s:9:"Tlie_1653";i:14;s:11:"single gene";i:15;s:7:"3308699";i:16;s:9:"Tlie_1653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1811271-1811390";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1811437-1812268";i:10;s:1:"+";i:11;s:9:"Tlie_1738";i:12;s:54:"ABC transporter; periplasmic substrate-binding protein";i:13;s:9:"Tlie_1738";i:14;s:6:"Operon";i:15;s:7:"1318761";i:16;s:29:"Tlie_1740;Tlie_1739;Tlie_1738";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016148.1";i:2;s:29:"Thermovirga lienii DSM 17291 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1928930-1929024";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1929114-1930392";i:10;s:1:"+";i:11;s:9:"Tlie_1850";i:12;s:32:"Hydroxymethylpyrimidine synthase";i:13;s:9:"Tlie_1850";i:14;s:6:"Operon";i:15;s:7:"1318785";i:16;s:19:"Tlie_1850;Tlie_1851";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}}
