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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
62968-63012
(-)
mini-ykkC
57576-59355 (-)
DSC_01220
DSC_01220
Operon
DOOR ID:
935302
DSC_01220,
DSC_01225
View Structure
2
67369-67473
(-)
ykkC-yxkD
66178-67291 (-)
DSC_01250
Putative ABC transporter substrate-binding protein
DSC_01250
Operon
DOOR ID:
935304
DSC_01240,
DSC_01245,
DSC_01250
View Structure
3
277063-277242
(+)
yybP-ykoY
277251-277833 (+)
DSC_02255
Putative manganese efflux pump MntP
DSC_02255
Operon
DOOR ID:
935347
DSC_02255,
DSC_02260
View Structure
4
391701-391878
(+)
FMN
392077-392683 (+)
DSC_02790
Riboflavin synthase subunit alpha
DSC_02790
Operon
DOOR ID:
935370
DSC_02790,
DSC_02795
View Structure
5
821804-821895
(-)
SAH
820321-821764 (-)
DSC_04765
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
DSC_04765
Single gene
DOOR ID:
3307455
DSC_04765
View Structure
6
1228649-1228744
(-)
TPP
1226400-1228575 (-)
DSC_06635
TonB-dependent siderophore receptor
DSC_06635
Operon
DOOR ID:
935529
DSC_06630,
DSC_06635
View Structure
7
1393824-1393939
(-)
glycine
1390802-1393718 (-)
DSC_07360
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
DSC_07360
Single gene
DOOR ID:
3307655
DSC_07360
View Structure
8
2711863-2711987
(-)
SAM
2710745-2711780 (-)
DSC_13385
Homoserine O-acetyltransferase
DSC_13385
Operon
DOOR ID:
935809
DSC_13380,
DSC_13385
View Structure
9
2927025-2927255
(+)
cobalamin
2927396-2929283 (+)
DSC_14355
TonB-dependent outer membrane receptor protein
DSC_14355
Single gene
DOOR ID:
3308180
DSC_14355
View Structure
10
3398039-3398258
(-)
cobalamin
3395430-3397854 (-)
DSC_00735
Ribonucleoside-diphosphate reductase
DSC_00735
Single gene
DOOR ID:
3307148
DSC_00735
View Structure
Genome:
Pseudoxanthomonas spadix BD-a59
(
NC_016147.2
);
Phylum:
Gammaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016147.2";i:2;s:32:"Pseudoxanthomonas spadix BD-a59 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1228649-1228744";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1226400-1228575";i:10;s:1:"-";i:11;s:9:"DSC_06635";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:9:"DSC_06635";i:14;s:6:"Operon";i:15;s:6:"935529";i:16;s:19:"DSC_06630;DSC_06635";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016147.2";i:2;s:32:"Pseudoxanthomonas spadix BD-a59 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1393824-1393939";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1390802-1393718";i:10;s:1:"-";i:11;s:9:"DSC_07360";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"DSC_07360";i:14;s:11:"Single gene";i:15;s:7:"3307655";i:16;s:9:"DSC_07360";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016147.2";i:2;s:32:"Pseudoxanthomonas spadix BD-a59 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2711863-2711987";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2710745-2711780";i:10;s:1:"-";i:11;s:9:"DSC_13385";i:12;s:30:"Homoserine O-acetyltransferase";i:13;s:9:"DSC_13385";i:14;s:6:"Operon";i:15;s:6:"935809";i:16;s:19:"DSC_13380;DSC_13385";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016147.2";i:2;s:32:"Pseudoxanthomonas spadix BD-a59 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2927025-2927255";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2927396-2929283";i:10;s:1:"+";i:11;s:9:"DSC_14355";i:12;s:46:"TonB-dependent outer membrane receptor protein";i:13;s:9:"DSC_14355";i:14;s:11:"Single gene";i:15;s:7:"3308180";i:16;s:9:"DSC_14355";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016147.2";i:2;s:32:"Pseudoxanthomonas spadix BD-a59 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3398039-3398258";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3395430-3397854";i:10;s:1:"-";i:11;s:9:"DSC_00735";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"DSC_00735";i:14;s:11:"Single gene";i:15;s:7:"3307148";i:16;s:9:"DSC_00735";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}
