About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
719924-720023
(+)
TPP
720051-721920 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MEALZ_0657
Single gene
DOOR ID:
3302029
MEALZ_0657
(thiC)
View Structure
2
1063133-1063362
(-)
cobalamin
1061184-1063026 (-)
MEALZ_0944
TonB-dependent receptor plug
MEALZ_0944
Single gene
DOOR ID:
3302111
MEALZ_0944
View Structure
3
1724286-1724416
(-)
cobalamin
1723210-1723858 (-)
MEALZ_1522
Cobalt transporter; subunit CbtA
MEALZ_1522
Operon
DOOR ID:
934298
MEALZ_1511,
MEALZ_1512,
MEALZ_1513,
MEALZ_1514
(cbiG)
,
MEALZ_1515,
MEALZ_1516,
MEALZ_1517
(cbiD)
,
MEALZ_1518
(cbiC)
,
MEALZ_1519,
MEALZ_1520
(cobM)
,
MEALZ_1521
(cobB)
,
MEALZ_1522
View Structure
4
3219719-3219804
(+)
c-di-GMP-I
3219888-3221724 (+)
MEALZ_2820
Peptidase S8 and S53 subtilisin kexin sedolisin
MEALZ_2820
single gene
DOOR ID:
3302769
MEALZ_2820
View Structure
Genome:
Methylomicrobium alcaliphilum
(
NC_016112.1
);
Phylum:
Gammaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016112.1";i:2;s:30:"Methylomicrobium alcaliphilum ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"719924-720023";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"720051-721920";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"MEALZ_0657";i:14;s:11:"Single gene";i:15;s:7:"3302029";i:16;s:16:"MEALZ_0657(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016112.1";i:2;s:30:"Methylomicrobium alcaliphilum ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1063133-1063362";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1061184-1063026";i:10;s:1:"-";i:11;s:10:"MEALZ_0944";i:12;s:28:"TonB-dependent receptor plug";i:13;s:10:"MEALZ_0944";i:14;s:11:"Single gene";i:15;s:7:"3302111";i:16;s:10:"MEALZ_0944";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016112.1";i:2;s:30:"Methylomicrobium alcaliphilum ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1724286-1724416";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1723210-1723858";i:10;s:1:"-";i:11;s:10:"MEALZ_1522";i:12;s:32:"Cobalt transporter; subunit CbtA";i:13;s:10:"MEALZ_1522";i:14;s:6:"Operon";i:15;s:6:"934298";i:16;s:161:"MEALZ_1511;MEALZ_1512;MEALZ_1513;MEALZ_1514(cbiG);MEALZ_1515;MEALZ_1516;MEALZ_1517(cbiD);MEALZ_1518(cbiC);MEALZ_1519;MEALZ_1520(cobM);MEALZ_1521(cobB);MEALZ_1522";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016112.1";i:2;s:30:"Methylomicrobium alcaliphilum ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3219719-3219804";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3219888-3221724";i:10;s:1:"+";i:11;s:10:"MEALZ_2820";i:12;s:47:"Peptidase S8 and S53 subtilisin kexin sedolisin";i:13;s:10:"MEALZ_2820";i:14;s:11:"single gene";i:15;s:7:"3302769";i:16;s:10:"MEALZ_2820";i:17;s:0:"";i:18;s:15:"View Structure ";}}
