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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
265356-265529
(-)
ykoK
263378-265034 (-)
SCAT_0205
SCAT_0205
Single gene
DOOR ID:
3299391
SCAT_0205
View Structure
2
404683-404849
(+)
ydaO-yuaA
404853-405327 (+)
SCAT_0344
SCAT_0344
Single gene
DOOR ID:
3299455
SCAT_0344
View Structure
3
788061-788165
(-)
glycine
787931-788059 (-)
SCAT_misc_RNA_35
SCAT_misc_RNA_35
Single gene
DOOR ID:
3301703
SCAT_misc_RNA_35
View Structure
4
1131380-1131507
(+)
cobalamin
1131627-1132566 (+)
cobD
SCAT_1046
Operon
DOOR ID:
932996
SCAT_1046
(cobD)
,
SCAT_1047
(cobQ)
,
SCAT_1048
(cobN)
,
SCAT_1049,
SCAT_1050
(cobO)
,
SCAT_1051
(cobB)
,
SCAT_1052,
SCAT_1053
(cbiF)
,
SCAT_1054,
SCAT_1055
(cbiX)
,
SCAT_1056
View Structure
5
1347145-1347257
(+)
TPP
1348467-1348686 (+)
SCAT_1230
SCAT_1230
Operon
DOOR ID:
933032
SCAT_1229,
SCAT_1230,
SCAT_1231
(thiG)
,
SCAT_1232
(spk)
,
SCAT_1233
(nfo)
View Structure
6
1382497-1382681
(-)
ydaO-yuaA
1381462-1382485 (-)
SCAT_1265
SCAT_1265
Single gene
DOOR ID:
3299825
SCAT_1265
View Structure
7
1387545-1387661
(-)
SAM-IV
1385921-1387283 (-)
SCAT_1270
SCAT_1270
Single gene
DOOR ID:
3299828
SCAT_1270
View Structure
8
2039695-2039766
(-)
ykkC-III
2039339-2039657 (-)
yvdR
SCAT_1930
single gene
DOOR ID:
3300098
SCAT_1930
(yvdR)
View Structure
9
2243495-2243677
(-)
ydaO-yuaA
2242814-2243489 (-)
SCAT_2114
SCAT_2114
Single gene
DOOR ID:
3300188
SCAT_2114
View Structure
10
2588241-2588403
(-)
SAM
2586943-2588224 (-)
SCAT_2449
SCAT_2449
Operon
DOOR ID:
933259
SCAT_2448
(cfp10A)
,
SCAT_2449
View Structure
11
3351824-3351938
(+)
TPP
3353850-3354072 (+)
SCAT_3181
SCAT_3181
Operon
DOOR ID:
933411
SCAT_3181,
SCAT_3182
View Structure
12
3582058-3582218
(+)
ydaO-yuaA
3582229-3583162 (+)
SCAT_3384
SCAT_3384
Single gene
DOOR ID:
3300698
SCAT_3384
View Structure
13
3962385-3962542
(-)
ydaO-yuaA
3961235-3962378 (-)
SCAT_3689
SCAT_3689
Single gene
DOOR ID:
3300809
SCAT_3689
View Structure
14
4377033-4377162
(-)
cobalamin
4374524-4376891 (-)
rnr
SCAT_4087
Operon
DOOR ID:
933582
SCAT_4086,
SCAT_4087
(rnr)
View Structure
15
4607705-4607803
(-)
glycine
4607574-4607703 (-)
SCAT_misc_RNA_36
SCAT_misc_RNA_36
Single gene
DOOR ID:
3301779
SCAT_misc_RNA_36
View Structure
16
4777357-4777470
(+)
TPP
4778108-4779515 (+)
SCAT_4457
SCAT_4457
Operon
DOOR ID:
933662
SCAT_4456,
SCAT_4457,
SCAT_4458
View Structure
17
5497230-5497453
(-)
cobalamin
5496083-5497199 (-)
hoxN
SCAT_5092
Operon
DOOR ID:
933801
SCAT_5090
(HIBCH)
,
SCAT_5091
(fabG)
,
SCAT_5092
(hoxN)
View Structure
18
5786423-5786553
(+)
FMN
5786706-5787828 (+)
ribD
SCAT_5370
Operon
DOOR ID:
933863
SCAT_5370
(ribD)
,
SCAT_5371
(ribE)
,
SCAT_5372,
SCAT_5373
(ribAB)
,
SCAT_5374
(ribH)
,
SCAT_5375
(hisE)
View Structure
19
5985530-5985602
(-)
TPP
5984903-5985503 (+)
SCAT_5571
SCAT_5571
Operon
DOOR ID:
933897
SCAT_5569
(hypF)
,
SCAT_5570,
SCAT_5571
View Structure
Genome:
Streptomyces cattleya NRRL 8057
(
NC_016111.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016111.1";i:2;s:31:"Streptomyces cattleya NRRL 8057";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"265356-265529";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"263378-265034";i:10;s:1:"-";i:11;s:9:"SCAT_0205";i:12;s:0:"";i:13;s:9:"SCAT_0205";i:14;s:11:"Single gene";i:15;s:7:"3299391";i:16;s:9:"SCAT_0205";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016111.1";i:2;s:31:"Streptomyces cattleya NRRL 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8057";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4377033-4377162";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4374524-4376891";i:10;s:1:"-";i:11;s:3:"rnr";i:12;s:0:"";i:13;s:9:"SCAT_4087";i:14;s:6:"Operon";i:15;s:6:"933582";i:16;s:24:"SCAT_4086;SCAT_4087(rnr)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016111.1";i:2;s:31:"Streptomyces cattleya NRRL 8057";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4607705-4607803";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4607574-4607703";i:10;s:1:"-";i:11;s:16:"SCAT_misc_RNA_36";i:12;s:0:"";i:13;s:16:"SCAT_misc_RNA_36";i:14;s:11:"Single gene";i:15;s:7:"3301779";i:16;s:16:"SCAT_misc_RNA_36";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_016111.1";i:2;s:31:"Streptomyces cattleya NRRL 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8057";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5786423-5786553";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5786706-5787828";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:9:"SCAT_5370";i:14;s:6:"Operon";i:15;s:6:"933863";i:16;s:90:"SCAT_5370(ribD);SCAT_5371(ribE);SCAT_5372;SCAT_5373(ribAB);SCAT_5374(ribH);SCAT_5375(hisE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_016111.1";i:2;s:31:"Streptomyces cattleya NRRL 8057";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5985530-5985602";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5984903-5985503";i:10;s:1:"+";i:11;s:9:"SCAT_5571";i:12;s:0:"";i:13;s:9:"SCAT_5571";i:14;s:6:"Operon";i:15;s:6:"933897";i:16;s:35:"SCAT_5569(hypF);SCAT_5570;SCAT_5571";i:17;s:0:"";i:18;s:15:"View Structure ";}}