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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
456605-456712
(+)
ZMP-ZTP
456744-458193 (+)
glyA2
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
KSE_03960
Single gene
DOOR ID:
3292188
KSE_03960
(glyA2)
View Structure
2
463777-463944
(+)
ydaO-yuaA
463947-465165 (+)
KSE_04020
KSE_04020
Single gene
DOOR ID:
3292189
KSE_04020
View Structure
3
478285-478457
(+)
ykoK
479075-480443 (+)
KSE_04140
Putative magnesium transporter
KSE_04140
Single gene
DOOR ID:
3292192
KSE_04140
View Structure
4
1281478-1281605
(-)
FMN
1280631-1281291 (-)
ribE
Putative riboflavin synthase alpha chain
KSE_11620
Single gene
DOOR ID:
3292698
KSE_11620
(ribE)
View Structure
5
1558707-1558918
(-)
cobalamin
1557555-1558677 (-)
KSE_14050
Nickel/cobalt efflux system
KSE_14050
Single gene
DOOR ID:
3292935
KSE_14050
View Structure
6
1692727-1692833
(-)
glycine
1689641-1692512 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
KSE_15260
Single gene
DOOR ID:
3293055
KSE_15260
(gcvP)
View Structure
7
1909554-1909723
(+)
ydaO-yuaA
1911181-1911373 (+)
KSE_17180
KSE_17180
Single gene
DOOR ID:
3293244
KSE_17180
View Structure
8
2391018-2391131
(+)
TPP
2391167-2392298 (+)
goxB
Putative glycine oxidase (9)
KSE_21480
Single gene
DOOR ID:
3293673
KSE_21480
(goxB)
View Structure
9
2419702-2419855
(-)
ydaO-yuaA
2418593-2419691 (-)
KSE_21760
Putative peptidase C40 family protein
KSE_21760
Single gene
DOOR ID:
3293700
KSE_21760
View Structure
10
2426078-2426195
(-)
SAM-IV
2424662-2426030 (-)
KSE_21820
Putative cysteine desulfurase (6)
KSE_21820
Single gene
DOOR ID:
3293706
KSE_21820
View Structure
11
2933889-2934041
(-)
ydaO-yuaA
2932863-2933883 (-)
KSE_26300
Putative peptidase M23 family protein
KSE_26300
Single gene
DOOR ID:
3294144
KSE_26300
View Structure
12
3209812-3209876
(-)
ykkC-III
3209462-3209777 (-)
KSE_28670
KSE_28670
single gene
DOOR ID:
3294379
KSE_28670
View Structure
13
4179610-4179761
(+)
TPP
4181212-4182013 (+)
KSE_37600
Putative glycerophosphoryl diester phosphodiesterase (6)
KSE_37600
Single gene
DOOR ID:
3295258
KSE_37600
View Structure
14
4449867-4449975
(+)
TPP
4452003-4452549 (+)
KSE_39920
KSE_39920
Single gene
DOOR ID:
3295486
KSE_39920
View Structure
15
4750844-4751007
(+)
ydaO-yuaA
4751017-4751803 (+)
KSE_42880
Putative peptidase
KSE_42880
Single gene
DOOR ID:
3295773
KSE_42880
View Structure
16
4873028-4873155
(+)
SAM
4873172-4874453 (+)
thrC2
Putative threonine synthase
KSE_44080
Single gene
DOOR ID:
3295891
KSE_44080
(thrC2)
View Structure
17
5178016-5178214
(+)
ydaO-yuaA
5178217-5178958 (+)
KSE_46740
KSE_46740
Single gene
DOOR ID:
3296155
KSE_46740
View Structure
18
5452065-5452203
(-)
cobalamin
5449474-5451889 (-)
nrdA
Ribonucleoside-diphosphate reductase
KSE_49280
Single gene
DOOR ID:
3296406
KSE_49280
(nrdA)
View Structure
19
5649913-5650016
(-)
glycine
5648641-5649760 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
KSE_50890
Single gene
DOOR ID:
3296567
KSE_50890
(gcvT)
View Structure
20
6307377-6307459
(-)
cobalamin
6306366-6307323 (-)
cobD
Cobalamin biosynthesis protein CobD
KSE_56420
Single gene
DOOR ID:
3297115
KSE_56420
(cobD)
View Structure
21
7282082-7282157
(-)
cobalamin
7278215-7281824 (-)
cobN
Putative cobalamin biosynthesis protein
KSE_64800
Single gene
DOOR ID:
3297940
KSE_64800
(cobN)
View Structure
22
8208319-8208400
(+)
ZMP-ZTP
8208425-8209292 (+)
folD2
Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]
KSE_72190
Single gene
DOOR ID:
3298674
KSE_72190
(folD2)
View Structure
Genome:
Kitasatospora setae KM-6054
(
NC_016109.1
);
Phylum:
Actinobacteria
a:23:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"456605-456712";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"456744-458193";i:10;s:1:"+";i:11;s:5:"glyA2";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"KSE_03960";i:14;s:11:"Single gene";i:15;s:7:"3292188";i:16;s:16:"KSE_03960(glyA2)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"463777-463944";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"463947-465165";i:10;s:1:"+";i:11;s:9:"KSE_04020";i:12;s:0:"";i:13;s:9:"KSE_04020";i:14;s:11:"Single gene";i:15;s:7:"3292189";i:16;s:9:"KSE_04020";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"478285-478457";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"479075-480443";i:10;s:1:"+";i:11;s:9:"KSE_04140";i:12;s:30:"Putative magnesium transporter";i:13;s:9:"KSE_04140";i:14;s:11:"Single gene";i:15;s:7:"3292192";i:16;s:9:"KSE_04140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1281478-1281605";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1280631-1281291";i:10;s:1:"-";i:11;s:4:"ribE";i:12;s:41:"Putative riboflavin synthase alpha chain ";i:13;s:9:"KSE_11620";i:14;s:11:"Single gene";i:15;s:7:"3292698";i:16;s:15:"KSE_11620(ribE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1558707-1558918";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1557555-1558677";i:10;s:1:"-";i:11;s:9:"KSE_14050";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:9:"KSE_14050";i:14;s:11:"Single gene";i:15;s:7:"3292935";i:16;s:9:"KSE_14050";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1692727-1692833";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1689641-1692512";i:10;s:1:"-";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"KSE_15260";i:14;s:11:"Single gene";i:15;s:7:"3293055";i:16;s:15:"KSE_15260(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1909554-1909723";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1911181-1911373";i:10;s:1:"+";i:11;s:9:"KSE_17180";i:12;s:0:"";i:13;s:9:"KSE_17180";i:14;s:11:"Single gene";i:15;s:7:"3293244";i:16;s:9:"KSE_17180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2391018-2391131";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2391167-2392298";i:10;s:1:"+";i:11;s:4:"goxB";i:12;s:28:"Putative glycine oxidase (9)";i:13;s:9:"KSE_21480";i:14;s:11:"Single gene";i:15;s:7:"3293673";i:16;s:15:"KSE_21480(goxB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2419702-2419855";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2418593-2419691";i:10;s:1:"-";i:11;s:9:"KSE_21760";i:12;s:37:"Putative peptidase C40 family protein";i:13;s:9:"KSE_21760";i:14;s:11:"Single gene";i:15;s:7:"3293700";i:16;s:9:"KSE_21760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2426078-2426195";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2424662-2426030";i:10;s:1:"-";i:11;s:9:"KSE_21820";i:12;s:33:"Putative cysteine desulfurase (6)";i:13;s:9:"KSE_21820";i:14;s:11:"Single gene";i:15;s:7:"3293706";i:16;s:9:"KSE_21820";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2933889-2934041";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2932863-2933883";i:10;s:1:"-";i:11;s:9:"KSE_26300";i:12;s:37:"Putative peptidase M23 family protein";i:13;s:9:"KSE_26300";i:14;s:11:"Single gene";i:15;s:7:"3294144";i:16;s:9:"KSE_26300";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3209812-3209876";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"3209462-3209777";i:10;s:1:"-";i:11;s:9:"KSE_28670";i:12;s:0:"";i:13;s:9:"KSE_28670";i:14;s:11:"single gene";i:15;s:7:"3294379";i:16;s:9:"KSE_28670";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4179610-4179761";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4181212-4182013";i:10;s:1:"+";i:11;s:9:"KSE_37600";i:12;s:56:"Putative glycerophosphoryl diester phosphodiesterase (6)";i:13;s:9:"KSE_37600";i:14;s:11:"Single gene";i:15;s:7:"3295258";i:16;s:9:"KSE_37600";i:17;s:36:"lipid metabolic process [GO:0006629]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4449867-4449975";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4452003-4452549";i:10;s:1:"+";i:11;s:9:"KSE_39920";i:12;s:0:"";i:13;s:9:"KSE_39920";i:14;s:11:"Single gene";i:15;s:7:"3295486";i:16;s:9:"KSE_39920";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4750844-4751007";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4751017-4751803";i:10;s:1:"+";i:11;s:9:"KSE_42880";i:12;s:18:"Putative peptidase";i:13;s:9:"KSE_42880";i:14;s:11:"Single gene";i:15;s:7:"3295773";i:16;s:9:"KSE_42880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4873028-4873155";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4873172-4874453";i:10;s:1:"+";i:11;s:5:"thrC2";i:12;s:28:"Putative threonine synthase ";i:13;s:9:"KSE_44080";i:14;s:11:"Single gene";i:15;s:7:"3295891";i:16;s:16:"KSE_44080(thrC2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5178016-5178214";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5178217-5178958";i:10;s:1:"+";i:11;s:9:"KSE_46740";i:12;s:0:"";i:13;s:9:"KSE_46740";i:14;s:11:"Single gene";i:15;s:7:"3296155";i:16;s:9:"KSE_46740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5452065-5452203";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5449474-5451889";i:10;s:1:"-";i:11;s:4:"nrdA";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"KSE_49280";i:14;s:11:"Single gene";i:15;s:7:"3296406";i:16;s:15:"KSE_49280(nrdA)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5649913-5650016";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"5648641-5649760";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"KSE_50890";i:14;s:11:"Single gene";i:15;s:7:"3296567";i:16;s:15:"KSE_50890(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6307377-6307459";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6306366-6307323";i:10;s:1:"-";i:11;s:4:"cobD";i:12;s:35:"Cobalamin biosynthesis protein CobD";i:13;s:9:"KSE_56420";i:14;s:11:"Single gene";i:15;s:7:"3297115";i:16;s:15:"KSE_56420(cobD)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"7282082-7282157";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"7278215-7281824";i:10;s:1:"-";i:11;s:4:"cobN";i:12;s:39:"Putative cobalamin biosynthesis protein";i:13;s:9:"KSE_64800";i:14;s:11:"Single gene";i:15;s:7:"3297940";i:16;s:15:"KSE_64800(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:22;a:19:{i:0;i:22;i:1;s:11:"NC_016109.1";i:2;s:27:"Kitasatospora setae KM-6054";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"8208319-8208400";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"8208425-8209292";i:10;s:1:"+";i:11;s:5:"folD2";i:12;s:78:"Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]";i:13;s:9:"KSE_72190";i:14;s:11:"Single gene";i:15;s:7:"3298674";i:16;s:16:"KSE_72190(folD2)";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}}
