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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80490-80694
(-)
cobalamin
79141-80167 (-)
KKY_81
Alkanal monooxygenase alpha chain
KKY_81
Operon
DOOR ID:
931765
KKY_78,
KKY_79,
KKY_80,
KKY_81
View Structure
2
281347-281494
(-)
FMN
280280-281246 (-)
KKY_289
Putative transmembrane protein
KKY_289
Single gene
DOOR ID:
3291361
KKY_289
View Structure
3
322303-322383
(-)
sam-alpha
321057-322266 (-)
KKY_326
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
KKY_326
Operon
DOOR ID:
931821
KKY_325,
KKY_326
View Structure
4
498925-499020
(+)
glycine
499285-500431 (+)
KKY_510
Aminomethyltransferase (Glycine cleavage system T protein)
KKY_510
Operon
DOOR ID:
931863
KKY_510,
KKY_511,
KKY_512,
KKY_513,
KKY_514
View Structure
5
499106-499218
(+)
glycine
499285-500431 (+)
KKY_510
Aminomethyltransferase (Glycine cleavage system T protein)
KKY_510
Operon
DOOR ID:
931863
KKY_510,
KKY_511,
KKY_512,
KKY_513,
KKY_514
View Structure
6
1577318-1577429
(-)
TPP
1576031-1576646 (-)
KKY_1573
Substrate-specific component YkoE of thiamin-regulated ECF transporter for hydroxymethylpyrimidine
KKY_1573
Operon
DOOR ID:
932078
KKY_1571,
KKY_1572,
KKY_1573,
KKY_1574
View Structure
7
2414846-2414944
(+)
TPP
2416065-2417664 (+)
KKY_2427
Thiamin ABC transporter; transmembrane component
KKY_2427
Operon
DOOR ID:
932271
KKY_2426,
KKY_2427,
KKY_2428
View Structure
8
3285628-3285723
(-)
SAH
3285174-3285435 (+)
KKY_3311
KKY_3311
Operon
DOOR ID:
932470
KKY_3309,
KKY_3310,
KKY_3311
View Structure
9
3609365-3609586
(+)
cobalamin
3609685-3610438 (+)
KKY_3638
KKY_3638
Operon
DOOR ID:
932542
KKY_3638,
KKY_3639,
KKY_3640,
KKY_3641,
KKY_3642
View Structure
10
3929510-3929732
(+)
cobalamin
3929973-3931026 (+)
KKY_3934
CobW GTPase involved in cobalt insertion for B12 biosynthesis
KKY_3934
Operon
DOOR ID:
932596
KKY_3934,
KKY_3935,
KKY_3936,
KKY_3937
View Structure
Genome:
Pelagibacterium halotolerans B2
(
NC_016078.1
);
Phylum:
Alphaproteobacteria
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