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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
56661-56765
(+)
TPP
56818-57400 (+)
TEH_00510
Putative thiamine transporter
TEH_00510
Operon
DOOR ID:
930257
TEH_00510,
TEH_00520,
TEH_00530
(thiM)
,
TEH_00540
(thiE)
,
TEH_00550
(thiD)
View Structure
2
374970-375067
(+)
THF
375123-375654 (+)
TEH_03620
TEH_03620
Single gene
DOOR ID:
3289047
TEH_03620
View Structure
3
687349-687410
(+)
fluoride
687645-688278 (+)
TEH_06660
TEH_06660
Operon
DOOR ID:
930397
TEH_06660,
TEH_06670,
TEH_06680
View Structure
4
1047752-1047868
(+)
FMN
1048032-1048701 (+)
TEH_10580
Riboflavin transporter
TEH_10580
Operon
DOOR ID:
930481
TEH_10580,
TEH_10590,
TEH_10600,
TEH_10610
View Structure
5
1492479-1492627
(+)
glmS
1492663-1494475 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
TEH_14810
Single gene
DOOR ID:
3289433
TEH_14810
(glmS)
View Structure
6
1553761-1553857
(-)
purine
1553115-1553697 (-)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
TEH_15350
Single gene
DOOR ID:
3289442
TEH_15350
(xpt)
View Structure
7
1888148-1888192
(+)
PreQ1
1888209-1889202 (+)
TEH_18810
Putative ribonucleoside hydrolase
TEH_18810
Operon
DOOR ID:
930653
TEH_18810,
TEH_18820
View Structure
8
1895612-1895656
(+)
PreQ1
1895673-1896663 (+)
TEH_18890
Putative ribonucleoside hydrolase
TEH_18890
Operon
DOOR ID:
930655
TEH_18890,
TEH_18900
View Structure
9
2008870-2008993
(-)
FMN
2008133-2008736 (-)
TEH_20090
Riboflavin transporter
TEH_20090
Single gene
DOOR ID:
3289611
TEH_20090
View Structure
10
2123430-2123595
(-)
ykoK
2121899-2123261 (-)
mgtE
Magnesium transporter MgtE
TEH_21150
Single gene
DOOR ID:
3289651
TEH_21150
(mgtE)
View Structure
11
2200922-2201092
(+)
lysine
2201210-2202809 (+)
TEH_21900
Putative amino acid ABC transporter amino acid-binding/permease protein
TEH_21900
Operon
DOOR ID:
930720
TEH_21900,
TEH_21910
View Structure
12
2439206-2439293
(-)
SMK_box
2437147-2437924 (-)
estA
Esterase
TEH_24450
Single gene
DOOR ID:
3289782
TEH_24450
(estA)
View Structure
Genome:
Tetragenococcus halophilus NBRC 12172
(
NC_016052.1
);
Phylum:
Firmicutes
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1553761-1553857";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1553115-1553697";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"TEH_15350";i:14;s:11:"Single gene";i:15;s:7:"3289442";i:16;s:14:"TEH_15350(xpt)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1888148-1888192";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1888209-1889202";i:10;s:1:"+";i:11;s:9:"TEH_18810";i:12;s:34:"Putative ribonucleoside hydrolase ";i:13;s:9:"TEH_18810";i:14;s:6:"Operon";i:15;s:6:"930653";i:16;s:19:"TEH_18810;TEH_18820";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1895612-1895656";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1895673-1896663";i:10;s:1:"+";i:11;s:9:"TEH_18890";i:12;s:34:"Putative ribonucleoside hydrolase ";i:13;s:9:"TEH_18890";i:14;s:6:"Operon";i:15;s:6:"930655";i:16;s:19:"TEH_18890;TEH_18900";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2008870-2008993";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2008133-2008736";i:10;s:1:"-";i:11;s:9:"TEH_20090";i:12;s:22:"Riboflavin transporter";i:13;s:9:"TEH_20090";i:14;s:11:"Single gene";i:15;s:7:"3289611";i:16;s:9:"TEH_20090";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2123430-2123595";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2121899-2123261";i:10;s:1:"-";i:11;s:4:"mgtE";i:12;s:26:"Magnesium transporter MgtE";i:13;s:9:"TEH_21150";i:14;s:11:"Single gene";i:15;s:7:"3289651";i:16;s:15:"TEH_21150(mgtE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2200922-2201092";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2201210-2202809";i:10;s:1:"+";i:11;s:9:"TEH_21900";i:12;s:71:"Putative amino acid ABC transporter amino acid-binding/permease protein";i:13;s:9:"TEH_21900";i:14;s:6:"Operon";i:15;s:6:"930720";i:16;s:19:"TEH_21900;TEH_21910";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016052.1";i:2;s:37:"Tetragenococcus halophilus NBRC 12172";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2439206-2439293";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"2437147-2437924";i:10;s:1:"-";i:11;s:4:"estA";i:12;s:9:"Esterase ";i:13;s:9:"TEH_24450";i:14;s:11:"Single gene";i:15;s:7:"3289782";i:16;s:15:"TEH_24450(estA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
