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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1360953-1361031
(+)
fluoride
1361031-1361976 (+)
GLX_11890
Universal stress protein
GLX_11890
Operon
DOOR ID:
926216
GLX_11890,
GLX_11900
View Structure
2
1376457-1376698
(-)
cobalamin
1374141-1375125 (-)
GLX_12030
GLX_12030
Operon
DOOR ID:
926220
GLX_12020,
GLX_12030
View Structure
3
1376826-1377072
(+)
cobalamin
1378752-1379157 (+)
GLX_12040
GLX_12040
Single gene
DOOR ID:
3281899
GLX_12040
View Structure
4
1378449-1378684
(+)
cobalamin
1378752-1379157 (+)
GLX_12040
GLX_12040
Single gene
DOOR ID:
3281899
GLX_12040
View Structure
5
1382039-1382277
(-)
cobalamin
1379822-1380914 (-)
GLX_12050
Ring-hydroxylating dioxygenase ferredoxin subunit
GLX_12050
Operon
DOOR ID:
926221
GLX_12050,
GLX_12060
View Structure
6
1387164-1387383
(-)
cobalamin
1384945-1387045 (-)
GLX_12100
TonB-dependent ferrichrome siderophore receptor
GLX_12100
Operon
DOOR ID:
926222
GLX_12070,
GLX_12080,
GLX_12090,
GLX_12100
View Structure
7
1392537-1392771
(-)
cobalamin
1391500-1392406 (-)
GLX_12150
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
GLX_12150
Single gene
DOOR ID:
3281900
GLX_12150
View Structure
8
1394717-1394949
(-)
cobalamin
1392919-1394650 (-)
GLX_12160
Porin
GLX_12160
Single gene
DOOR ID:
3281901
GLX_12160
View Structure
9
1557899-1557979
(+)
sam-alpha
1558113-1559316 (+)
GLX_13590
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
GLX_13590
Operon
DOOR ID:
926253
GLX_13590,
GLX_13600,
GLX_13610
View Structure
10
1802500-1802693
(+)
cobalamin
1802714-1804487 (+)
GLX_16010
Porin
GLX_16010
Operon
DOOR ID:
926293
GLX_16010,
GLX_16020,
GLX_16030
View Structure
11
1964354-1964514
(-)
FMN
1963219-1964350 (-)
ribD
Riboflavin biosynthesis protein
GLX_17500
Operon
DOOR ID:
926324
GLX_17470,
GLX_17480,
GLX_17490,
GLX_17500
(ribD)
View Structure
12
1983852-1983948
(+)
TPP
1985073-1985595 (-)
GLX_17700
GLX_17700
Single gene
DOOR ID:
3282111
GLX_17700
View Structure
13
2230800-2231034
(-)
cobalamin
2230232-2230637 (-)
GLX_20020
GLX_20020
Single gene
DOOR ID:
3282211
GLX_20020
View Structure
14
2238309-2238454
(-)
TPP
2236364-2238206 (-)
GLX_20090
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
GLX_20090
Single gene
DOOR ID:
3282218
GLX_20090
View Structure
15
2705039-2705126
(+)
glycine
2705379-2706513 (+)
GLX_24500
Glycine cleavage system T protein
GLX_24500
Single gene
DOOR ID:
3282383
GLX_24500
View Structure
16
2787789-2787941
(-)
FMN
2787150-2787705 (-)
GLX_25170
Methyltransferase
GLX_25170
Single gene
DOOR ID:
3282409
GLX_25170
View Structure
Genome:
Gluconacetobacter xylinus NBRC 3288
(
NC_016027.1
);
Phylum:
Alphaproteobacteria
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ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1557899-1557979";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1558113-1559316";i:10;s:1:"+";i:11;s:9:"GLX_13590";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"GLX_13590";i:14;s:6:"Operon";i:15;s:6:"926253";i:16;s:29:"GLX_13590;GLX_13600;GLX_13610";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1802500-1802693";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1802714-1804487";i:10;s:1:"+";i:11;s:9:"GLX_16010";i:12;s:5:"Porin";i:13;s:9:"GLX_16010";i:14;s:6:"Operon";i:15;s:6:"926293";i:16;s:29:"GLX_16010;GLX_16020;GLX_16030";i:17;s:63:"carbohydrate transport [GO:0008643]; ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1964354-1964514";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1963219-1964350";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:31:"Riboflavin biosynthesis protein";i:13;s:9:"GLX_17500";i:14;s:6:"Operon";i:15;s:6:"926324";i:16;s:45:"GLX_17470;GLX_17480;GLX_17490;GLX_17500(ribD)";i:17;s:86:"oxidation-reduction process [GO:0055114]; riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1983852-1983948";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1985073-1985595";i:10;s:1:"-";i:11;s:9:"GLX_17700";i:12;s:0:"";i:13;s:9:"GLX_17700";i:14;s:11:"Single gene";i:15;s:7:"3282111";i:16;s:9:"GLX_17700";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2230800-2231034";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2230232-2230637";i:10;s:1:"-";i:11;s:9:"GLX_20020";i:12;s:0:"";i:13;s:9:"GLX_20020";i:14;s:11:"Single gene";i:15;s:7:"3282211";i:16;s:9:"GLX_20020";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2238309-2238454";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2236364-2238206";i:10;s:1:"-";i:11;s:9:"GLX_20090";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"GLX_20090";i:14;s:11:"Single gene";i:15;s:7:"3282218";i:16;s:9:"GLX_20090";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2705039-2705126";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2705379-2706513";i:10;s:1:"+";i:11;s:9:"GLX_24500";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"GLX_24500";i:14;s:11:"Single gene";i:15;s:7:"3282383";i:16;s:9:"GLX_24500";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_016027.1";i:2;s:35:"Gluconacetobacter xylinus NBRC 3288";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2787789-2787941";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2787150-2787705";i:10;s:1:"-";i:11;s:9:"GLX_25170";i:12;s:17:"Methyltransferase";i:13;s:9:"GLX_25170";i:14;s:11:"Single gene";i:15;s:7:"3282409";i:16;s:9:"GLX_25170";i:17;s:0:"";i:18;s:15:"View Structure ";}}