Genome: Bacillus coagulans 36D1 (NC_016023.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 255307-255451 (-)yybP-ykoY254369-255173 (-)Bcoa_0256

Integral membrane protein TerC		Bcoa_0256Single gene

DOOR ID: 3278113		Bcoa_0256 View Structure
2 500715-500822 (-)SAM499312-500611 (-)Bcoa_0487

O-acetylhomoserine/O-acetylserine sulfhydrylase		Bcoa_0487Single gene

DOOR ID: 3278232		Bcoa_0487 View Structure
3 583684-583773 (-)TPP582855-583626 (-)Bcoa_0561

Aminopyrimidine aminohydrolase 		Bcoa_0561Operon

DOOR ID: 924703		Bcoa_0560,
Bcoa_0561		 View Structure
4 669253-669355 (-)TPP668099-668888 (-)Bcoa_0634

ABC-type transporter; integral membrane subunit		Bcoa_0634Operon

DOOR ID: 924718		Bcoa_0632,
Bcoa_0633,
Bcoa_0634,
Bcoa_0635		 View Structure
5 732208-732327 (-)SAM731014-732199 (-)Bcoa_0683

Cys/Met metabolism pyridoxal-phosphate-dependent protein		Bcoa_0683Operon

DOOR ID: 924726		Bcoa_0682,
Bcoa_0683		 View Structure
6 926937-927033 (-)ykkC-yxkD925528-926875 (-)Bcoa_0864

Amino acid permease-associated region		Bcoa_0864Operon

DOOR ID: 924764		Bcoa_0862,
Bcoa_0863,
Bcoa_0864		 View Structure
7 927248-927350 (+)ykkC-yxkD927422-928145 (+)Bcoa_0865

Urea carboxylase-associated protein 2		Bcoa_0865Operon

DOOR ID: 924765		Bcoa_0865,
Bcoa_0866,
Bcoa_0867,
Bcoa_0868		 View Structure
8 960734-960835 (-)SAM958830-960720 (-)Bcoa_0890

Homocysteine S-methyltransferase		Bcoa_0890Operon

DOOR ID: 924771		Bcoa_0890,
Bcoa_0891,
Bcoa_0892		 View Structure
9 978920-979068 (-)ydaO-yuaA976990-978811 (-)Bcoa_0907

Metabolite transporter		Bcoa_0907Single gene

DOOR ID: 3278415		Bcoa_0907 View Structure
10 1039628-1039821 (+)lysine1039920-1041411 (+)Bcoa_0960

Amino acid permease-associated region		Bcoa_0960Single gene

DOOR ID: 3278439		Bcoa_0960 View Structure
11 1076812-1076897 (-)c-di-GMP-I1075692-1076733 (-)Bcoa_0991

Diguanylate cyclase		Bcoa_0991single gene

DOOR ID: 3278463		Bcoa_0991 View Structure
12 1085797-1085901 (-)SAM1084979-1085705 (-)Bcoa_0998

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		Bcoa_0998Single gene

DOOR ID: 3278468		Bcoa_0998 View Structure
13 1125863-1126059 (-)cobalamin1123502-1125737 (-)Bcoa_1036

Ribonucleoside-diphosphate reductase 		Bcoa_1036Operon

DOOR ID: 924797		Bcoa_1034,
Bcoa_1035,
Bcoa_1036,
Bcoa_1037,
Bcoa_1038		 View Structure
14 1198357-1198523 (-)glmS1196454-1198257 (-)Bcoa_1102

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Bcoa_1102Single gene

DOOR ID: 3278513		Bcoa_1102 View Structure
15 1405866-1406005 (+)FMN1406121-1407234 (+)Bcoa_1299

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Bcoa_1299Operon

DOOR ID: 924849		Bcoa_1299,
Bcoa_1300,
Bcoa_1301,
Bcoa_1302		 View Structure
16 1458578-1458622 (+)PreQ11458736-1459237 (+)Bcoa_1346

NADPH-dependent 7-cyano-7-deazaguanine reductase (3) (7-cyano-7-carbaguanine reductase) (NADPH-dependent nitrile oxidoreductase) (PreQ(0) reductase)		Bcoa_1346Operon

DOOR ID: 924859		Bcoa_1346,
Bcoa_1347		 View Structure
17 1476772-1476880 (+)SAM1476952-1477993 (+)Bcoa_1361

Methionine import ATP-binding protein MetN 		Bcoa_1361Operon

DOOR ID: 924862		Bcoa_1361,
Bcoa_1362,
Bcoa_1363		 View Structure
18 1723617-1723718 (+)purine1723849-1725178 (+)Bcoa_1598

Xanthine/uracil/vitamin C permease		Bcoa_1598Single gene

DOOR ID: 3278696		Bcoa_1598 View Structure
19 1737361-1737461 (+)purine1737579-1738080 (+)Bcoa_1607

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Bcoa_1607Operon

DOOR ID: 924916		Bcoa_1607,
Bcoa_1608,
Bcoa_1609,
Bcoa_1610,
Bcoa_1611,
Bcoa_1612,
Bcoa_1613,
Bcoa_1614,
Bcoa_1615,
Bcoa_1616,
Bcoa_1617		 View Structure
20 1809084-1809142 (-)cobalamin1807544-1808972 (-)Bcoa_1674

LPXTG-motif cell wall anchor domain protein		Bcoa_1674Operon

DOOR ID: 924927		Bcoa_1672,
Bcoa_1673,
Bcoa_1674		 View Structure
21 1844126-1844232 (-)SAM1843830-1844010 (-)Bcoa_1705

Bcoa_1705Single gene

DOOR ID: 3278735		Bcoa_1705 View Structure
22 2056079-2056186 (-)SAM2055032-2055989 (-)Bcoa_1885

Probable membrane transporter protein		Bcoa_1885Single gene

DOOR ID: 3278814		Bcoa_1885 View Structure
23 2129768-2129915 (+)ydaO-yuaA2130120-2131422 (+)Bcoa_1946

Sodium:dicarboxylate symporter		Bcoa_1946Single gene

DOOR ID: 3278844		Bcoa_1946 View Structure
24 2189771-2189855 (+)c-di-GMP-I2189954-2190314 (+)Bcoa_2012

Uncharacterized protein		Bcoa_2012operon

DOOR ID: 924989		Bcoa_2012,
Bcoa_2013,
Bcoa_2014		 View Structure
25 2234211-2234314 (-)SAM2232968-2234072 (-)Bcoa_2048

Methionine synthase vitamin-B12 independent		Bcoa_2048Single gene

DOOR ID: 3278898		Bcoa_2048 View Structure
26 2638191-2638339 (+)SAM2638484-2639696 (+)Bcoa_2418

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Bcoa_2418Single gene

DOOR ID: 3279084		Bcoa_2418 View Structure
27 2793986-2794030 (-)PreQ12793275-2793941 (-)Bcoa_2556

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		Bcoa_2556Operon

DOOR ID: 925088		Bcoa_2555,
Bcoa_2556		 View Structure
28 2821739-2821916 (+)lysine2822052-2823282 (+)Bcoa_2583

Aspartokinase 		Bcoa_2583Single gene

DOOR ID: 3279163		Bcoa_2583 View Structure
29 3047681-3047771 (+)glycine3047939-3049061 (+)Bcoa_2825

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Bcoa_2825Operon

DOOR ID: 925153		Bcoa_2825,
Bcoa_2826,
Bcoa_2827		 View Structure
30 3140867-3141002 (+)FMN3141149-3141728 (+)Bcoa_2926

Riboflavin transporter		Bcoa_2926Single gene

DOOR ID: 3279280		Bcoa_2926 View Structure
31 3182588-3182632 (+)PreQ13182638-3183121 (+)Bcoa_2976

Bcoa_2976Single gene

DOOR ID: 3279297		Bcoa_2976 View Structure
32 3218091-3218192 (+)purine3218344-3218932 (+)Bcoa_3009

Xanthine phosphoribosyltransferase (XPRTase) (2)		Bcoa_3009Operon

DOOR ID: 925197		Bcoa_3009,
Bcoa_3010		 View Structure
33 3328032-3328132 (-)SAM3326054-3327911 (-)Bcoa_3120

Sulfite reductase [NADPH] flavoprotein alpha-component 		Bcoa_3120Operon

DOOR ID: 925222		Bcoa_3119,
Bcoa_3120		 View Structure
34 3332578-3332689 (-)TPP3331566-3332331 (-)Bcoa_3125

ABC-type transporter; integral membrane subunit		Bcoa_3125Operon

DOOR ID: 925224		Bcoa_3124,
Bcoa_3125		 View Structure
35 3348049-3348160 (-)TPP3347219-3347981 (-)Bcoa_3139

Short-chain dehydrogenase/reductase SDR		Bcoa_3139Operon

DOOR ID: 925227		Bcoa_3136,
Bcoa_3137,
Bcoa_3138,
Bcoa_3139		 View Structure
36 3351296-3351392 (-)ykkC-yxkD3350774-3351215 (-)Bcoa_3142

NUDIX hydrolase		Bcoa_3142Single gene

DOOR ID: 3279361		Bcoa_3142 View Structure
37 3442513-3442613 (-)TPP3441873-3442464 (-)Bcoa_3242

Proton-coupled thiamine transporter YuaJ		Bcoa_3242Single gene

DOOR ID: 3279402		Bcoa_3242 View Structure