RiboswitchDB

Genome: Candidatus Arthromitus sp. SFB-rat-Yit (NC_016012.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

349860-350048 (+)

cobalamin

350182-351055 (+)

RATSFB_0289

Iron compound ABC transporter; iron-binding protein

Operon

DOOR ID: 924365

RATSFB_0289,
RATSFB_0290,
RATSFB_0291 (FhuC),
RATSFB_0292

2

623059-623160 (+)

purine

623291-624590 (+)

RATSFB_0534

Guanine-hypoxanthine permease

Operon

DOOR ID: 924415

RATSFB_0534,
RATSFB_0535 (guaA)

3

1311901-1312007 (-)

TPP

1311234-1311831 (-)

RATSFB_1143

Putative proton-coupled thiamine transporter YuaJ

Single gene

DOOR ID: 3277950

RATSFB_1143

a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016012.1";i:2;s:38:"Candidatus Arthromitus sp. SFB-rat-Yit";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"349860-350048";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"350182-351055";i:10;s:1:"+";i:11;s:11:"RATSFB_0289";i:12;s:51:"Iron compound ABC transporter; iron-binding protein";i:13;s:11:"RATSFB_0289";i:14;s:6:"Operon";i:15;s:6:"924365";i:16;s:53:"RATSFB_0289;RATSFB_0290;RATSFB_0291(FhuC);RATSFB_0292";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016012.1";i:2;s:38:"Candidatus Arthromitus sp. SFB-rat-Yit";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"623059-623160";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"623291-624590";i:10;s:1:"+";i:11;s:11:"RATSFB_0534";i:12;s:29:"Guanine-hypoxanthine permease";i:13;s:11:"RATSFB_0534";i:14;s:6:"Operon";i:15;s:6:"924415";i:16;s:29:"RATSFB_0534;RATSFB_0535(guaA)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016012.1";i:2;s:38:"Candidatus Arthromitus sp. SFB-rat-Yit";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1311901-1312007";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1311234-1311831";i:10;s:1:"-";i:11;s:11:"RATSFB_1143";i:12;s:49:"Putative proton-coupled thiamine transporter YuaJ";i:13;s:11:"RATSFB_1143";i:14;s:11:"Single gene";i:15;s:7:"3277950";i:16;s:11:"RATSFB_1143";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure
";}}