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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
853263-853441
(+)
FMN
853609-854212 (+)
ribE
Riboflavin synthase subunit alpha
XACM_0744
Operon
DOOR ID:
923059
XACM_0744
(ribE)
,
XACM_0745
(ribB)
View Structure
2
917933-918045
(-)
SAH
916458-917901 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XACM_0800
Single gene
DOOR ID:
3275154
XACM_0800
(sahH)
View Structure
3
1329008-1329122
(-)
glycine
1326043-1328908 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XACM_1185
Single gene
DOOR ID:
3275315
XACM_1185
(gcvP)
View Structure
4
2322265-2322333
(+)
fluoride
2322441-2322843 (+)
XACM_2038
Putative fluoride ion transporter CrcB
XACM_2038
Single gene
DOOR ID:
3275679
XACM_2038
View Structure
5
3404754-3404874
(-)
SAM
3403652-3404684 (-)
XACM_2962
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XACM_2962
Operon
DOOR ID:
923498
XACM_2960
(metL)
,
XACM_2961
(metB)
,
XACM_2962
View Structure
6
3595806-3596030
(-)
cobalamin
3593814-3595692 (-)
XACM_3108
TonB-dependent outer membrane receptor
XACM_3108
Single gene
DOOR ID:
3276101
XACM_3108
View Structure
7
3863802-3863899
(-)
TPP
3861832-3863710 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XACM_3338
Single gene
DOOR ID:
3276217
XACM_3338
(thiC)
View Structure
8
4701201-4701361
(+)
yybP-ykoY
4701373-4701958 (+)
XACM_4064
Putative manganese efflux pump MntP
XACM_4064
Single gene
DOOR ID:
3276555
XACM_4064
View Structure
Genome:
Xanthomonas axonopodis pv. citrumelo F1
(
NC_016010.1
);
Phylum:
Gammaproteobacteria
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